perfSONAR User Q&A and Other Discussion

[Brian Tierney <>]

That was the problem. Thanks!

On Feb 26, 2010, at 3:09 AM, Fausto Vetter wrote:

> Hi Brian,
>
> By the way, which java version are you using? Is it SUN's or not?  
> SUN's one should be used to run Tomcat.
>
> If you check the following soft link in your linux system, it should  
> be pointing to the path of the SUN SDK. If not, unlink this link and  
> recreate pointing to the SUN SDK and restart tomcat. Finally, check  
> if this solves your problem.
>
> soft link: /etc/alternatives/java_sdk
> should point to something like: /usr/lib/jvm/[sun jdk folder]
>
> Cheers,
> ______________________________________________________________________
>
> Mr Fausto Vetter
> Network & Services Support Engineer
>
> DANTE - www.dante.net
>
> Tel: +44 (0)1223 371 357
> Fax: +44 (0)1223 371 371
> Email: 
>
>
> City House, 126-130 Hills Road
> Cambridge CB2 1PQ
> UK
> _____________________________________________________________________
>
>
> > -----Original Message-----
> > From: Brian Tierney 
> > [mailto:]
> > Sent: 24 February 2010 18:26
> > To: Fausto Vetter
> > Cc: Slawomir Trzaszczka; 
> >
> > Subject: Re: [perfsonar-user] perfSONAR MDM install help needed
> >
> >
> > On Feb 24, 2010, at 1:56 AM, Fausto Vetter wrote:
> >
> > > Dear Brian,
> > >
> > > You can find the answer to your question about this issue in:
> > http://lkamal.blogspot.com/2009/07/validatejarfile-jar-not-loaded-
> > servlet.html
> > >
> >
> > This explains the warning message but not these:
> >
> > SEVERE: Error listenerStart
> > 23-Feb-10 5:28:05 PM org.apache.catalina.core.StandardContext start
> > SEVERE: Context [/geant2-java-xml-ls] startup failed due to previous
> > errors
> > - Exception sending context destroyed event to listener instance of
> > class org.perfsonar.service.base.container.listeners.
> > StartupInitializer
> >
> >
> > > I hope it solves your issue,
> > ______________________________________________________________________
> > > Mr Fausto Vetter
> > > Network & Services Support Engineer
> > >
> > > DANTE - www.dante.net
> > >
> > > Tel: +44 (0)1223 371 357
> > > Fax: +44 (0)1223 371 371
> > > Email: 
> > >
> > >
> > > City House, 126-130 Hills Road
> > > Cambridge CB2 1PQ
> > > UK
> > > _____________________________________________________________________
> > >
> > > > -----Original Message-----
> > > > From: Brian Tierney 
> > > > [mailto:]
> > > > Sent: 24 February 2010 01:37
> > > > To: Slawomir Trzaszczka
> > > > Cc: 
> > > >
> > > > Subject: Re: [perfsonar-user] perfSONAR MDM install help needed
> > > >
> > > >
> > > > On Feb 22, 2010, at 11:46 PM, Slawomir Trzaszczka wrote:
> > > >
> > > > > Hi Brian,
> > > > >
> > > > > could you send me entire log file ?
> > > >
> > > > Here is the entire log file. I also verified that nothing else is
> > > > running on that port.
> > > >
> > > > Created MBeanServer with ID: 7rtuyr:g61g441r.0:odev-vm-9.es.net:1
> > > > 23-Feb-10 5:27:32 PM org.apache.catalina.core.AprLifecycleListener
> > > > lifecycleEvent
> > > > INFO: The Apache Tomcat Native library which allows optimal
> > > > performance in production environments was not found on the j
> > > > ava.library.path: /usr/lib64/gcj-4.1.2
> > > > 23-Feb-10 5:27:32 PM org.apache.coyote.http11.Http11BaseProtocol
> > init
> > > > INFO: Initializing Coyote HTTP/1.1 on http-8080
> > > > 23-Feb-10 5:27:32 PM org.apache.catalina.startup.Catalina load
> > > > INFO: Initialization processed in 971 ms
> > > > 23-Feb-10 5:27:32 PM org.apache.catalina.core.StandardService start
> > > > INFO: Starting service Catalina
> > > > 23-Feb-10 5:27:32 PM org.apache.catalina.core.StandardEngine start
> > > > INFO: Starting Servlet Engine: Apache Tomcat/5.5.23
> > > > 23-Feb-10 5:27:32 PM org.apache.catalina.core.StandardHost start
> > > > INFO: XML validation disabled
> > > > 23-Feb-10 5:27:32 PM org.apache.catalina.loader.WebappClassLoader
> > > > validateJarFile
> > > > INFO: validateJarFile(/usr/share/tomcat5/webapps/geant2-java-xml- 
> > > > ls/
> > > > WEB-INF/lib/servlet-api-5.0.28.jar) - jar not loaded.
> > > > See Servlet Spec 2.3, section 9.7.2. Offending class:
> > javax/servlet/
> > > > Servlet.class
> > > > - Exception sending context initialized event to listener instance
> > of
> > > > class org.perfsonar.service.base.container.listener
> > > > s.StartupInitializer
> > > > java.lang.NoClassDefFoundError:
> > > > org.perfsonar.base.auxiliary.AuxiliaryComponentManager
> > > >   at java.lang.Class.initializeClass(libgcj.so.7rh)
> > > >   at
> > > > org
> > > > .perfsonar
> > > > .service
> > > > .base
> > > > .container.listeners.StartupInitializer.contextInitialized(Unknown
> > > > Source:33)
> > > >   at
> > > > org
> > > > .apache
> > > > .catalina
> > > > .core 
> > > > .StandardContext.listenerStart(catalina-5.5.23.jar.so5pdwxe.so)
> > > >   at
> > > > org
> > > > .apache
> > > > .catalina.core.StandardContext.start(catalina-
> > 5.5.23.jar.so5pdwxe.so)
> > > >   at
> > > > org
> > > > .apache
> > > > .catalina
> > > > .core.ContainerBase.addChildInternal(catalina-
> > 5.5.23.jar.so5pdwxe.so)
> > > >   at
> > > > org
> > > > .apache
> > > > .catalina
> > > > .core.ContainerBase.addChild(catalina-5.5.23.jar.so5pdwxe.so)
> > > >   at
> > > > org
> > > > .apache
> > > > .catalina.core.StandardHost.addChild(catalina-
> > 5.5.23.jar.so5pdwxe.so)
> > > >   at
> > > > org
> > > > .apache
> > > > .catalina
> > > > .startup 
> > > > .HostConfig.deployDirectory(catalina-5.5.23.jar.so5pdwxe.so)
> > > >   at
> > > > org
> > > > .apache
> > > > .catalina
> > > > .startup
> > > > .HostConfig.deployDirectories(catalina-5.5.23.jar.so5pdwxe.so)
> > > >   at
> > > > org
> > > > .apache
> > > > .catalina.startup.HostConfig.deployApps(catalina-
> > > > 5.5.23.jar.so5pdwxe.so)
> > > >   at
> > > > org
> > > > .apache
> > > > .catalina.startup.HostConfig.start(catalina-5.5.23.jar.so5pdwxe.so)
> > > >   at
> > > > org
> > > > .apache
> > > > .catalina
> > > > .startup.HostConfig.lifecycleEvent(catalina-5.5.23.jar.so5pdwxe.so)
> > > >   at
> > > > org
> > > > .apache
> > > > .catalina
> > > > .util
> > > > .LifecycleSupport.fireLifecycleEvent(catalina-
> > 5.5.23.jar.so5pdwxe.so)
> > > >   at
> > > > org
> > > > .apache
> > > > .catalina.core.ContainerBase.start(catalina-5.5.23.jar.so5pdwxe.so)
> > > >   at
> > > > org
> > > > .apache
> > > > .catalina.core.StandardHost.start(catalina-5.5.23.jar.so5pdwxe.so)
> > > >   at
> > > > org
> > > > .apache
> > > > .catalina.core.ContainerBase.start(catalina-5.5.23.jar.so5pdwxe.so)
> > > >   at
> > > > org
> > > > .apache
> > > > .catalina 
> > > > .core.StandardEngine.start(catalina-5.5.23.jar.so5pdwxe.so)
> > > >   at
> > > > org
> > > > .apache
> > > > .catalina.core.StandardService.start(catalina-
> > 5.5.23.jar.so5pdwxe.so)
> > > >   at
> > > > org
> > > > .apache
> > > > .catalina 
> > > > .core.StandardServer.start(catalina-5.5.23.jar.so5pdwxe.so)
> > > >   at
> > > > org
> > > > .apache.catalina.startup.Catalina.start(catalina-
> > > > 5.5.23.jar.so5pdwxe.so)
> > > >   at java.lang.reflect.Method.invoke(libgcj.so.7rh)
> > > >   at org.apache.catalina.startup.Bootstrap.start(bootstrap.jar.so)
> > > >   at org.apache.catalina.startup.Bootstrap.main(bootstrap.jar.so)
> > > > Caused by: java.lang.ClassNotFoundException:
> > > > java.util.concurrent.ConcurrentMap
> > > >   at
> > > > org
> > > > .apache
> > > > .catalina
> > > > .loader 
> > > > .WebappClassLoader.loadClass(catalina-5.5.23.jar.so5pdwxe.so)
> > > >   at
> > > > org
> > > > .apache
> > > > .catalina
> > > > .loader 
> > > > .WebappClassLoader.loadClass(catalina-5.5.23.jar.so5pdwxe.so)
> > > >   at java.lang.Class.initializeClass(libgcj.so.7rh)
> > > >   ...22 more
> > > >
> > > > 23-Feb-10 5:28:05 PM org.apache.catalina.core.StandardContext start
> > > > SEVERE: Error listenerStart
> > > > 23-Feb-10 5:28:05 PM org.apache.catalina.core.StandardContext start
> > > > SEVERE: Context [/geant2-java-xml-ls] startup failed due to  
> > > > previous
> > > > errors
> > > > - Exception sending context destroyed event to listener instance of
> > > > class org.perfsonar.service.base.container.listeners.
> > > > StartupInitializer
> > > > java.lang.NoClassDefFoundError:
> > > > org.perfsonar.base.auxiliary.AuxiliaryComponentManager
> > > >   at java.lang.Class.initializeClass(libgcj.so.7rh)
> > > >   at
> > > > org
> > > > .perfsonar
> > > > .service
> > .base.container.listeners.StartupInitializer.contextDestroyed(Unknown
> > > > Source:57)
> > > >   at
> > > > org
> > > > .apache
> > > > .catalina
> > > > .core.StandardContext.listenerStop(catalina-5.5.23.jar.so5pdwxe.so)
> > > >   at
> > > > org
> > > > .apache
> > > > .catalina 
> > > > .core.StandardContext.stop(catalina-5.5.23.jar.so5pdwxe.so)
> > > >   at
> > > > org
> > > > .apache
> > > > .catalina.core.StandardContext.start(catalina-
> > 5.5.23.jar.so5pdwxe.so)
> > > >   at
> > > > org
> > > > .apache
> > > > .catalina
> > > > .core.ContainerBase.addChildInternal(catalina-
> > 5.5.23.jar.so5pdwxe.so)
> > > >   at
> > > > org
> > > > .apache
> > > > .catalina
> > > > .core.ContainerBase.addChild(catalina-5.5.23.jar.so5pdwxe.so)
> > > >   at
> > > > org
> > > > .apache
> > > > .catalina.core.StandardHost.addChild(catalina-
> > 5.5.23.jar.so5pdwxe.so)
> > > >   at
> > > > org
> > > > .apache
> > > > .catalina
> > > > .startup 
> > > > .HostConfig.deployDirectory(catalina-5.5.23.jar.so5pdwxe.so)
> > > >   at
> > > > org
> > > > .apache
> > > > .catalina
> > > > .startup
> > > > .HostConfig.deployDirectories(catalina-5.5.23.jar.so5pdwxe.so)
> > > >   at
> > > > org
> > > > .apache
> > > > .catalina.startup.HostConfig.deployApps(catalina-
> > > > 5.5.23.jar.so5pdwxe.so)
> > > >   at
> > > > org
> > > > .apache
> > > > .catalina.startup.HostConfig.start(catalina-5.5.23.jar.so5pdwxe.so)
> > > >   at
> > > > org
> > > > .apache
> > > > .catalina
> > > > .startup.HostConfig.lifecycleEvent(catalina-5.5.23.jar.so5pdwxe.so)
> > > >   at
> > > > org
> > > > .apache
> > > > .catalina
> > > > .util
> > > > .LifecycleSupport.fireLifecycleEvent(catalina-
> > 5.5.23.jar.so5pdwxe.so)
> > > >   at
> > > > org
> > > > .apache
> > > > .catalina.core.ContainerBase.start(catalina-5.5.23.jar.so5pdwxe.so)
> > > >   at
> > > > org
> > > > .apache
> > > > .catalina.core.StandardHost.start(catalina-5.5.23.jar.so5pdwxe.so)
> > > >   at
> > > > org
> > > > .apache
> > > > .catalina.core.ContainerBase.start(catalina-5.5.23.jar.so5pdwxe.so)
> > > >   at
> > > > org
> > > > .apache
> > > > .catalina 
> > > > .core.StandardEngine.start(catalina-5.5.23.jar.so5pdwxe.so)
> > > >   at
> > > > org
> > > > .apache
> > > > .catalina.core.StandardService.start(catalina-
> > 5.5.23.jar.so5pdwxe.so)
> > > >   at
> > > > org
> > > > .apache
> > > > .catalina 
> > > > .core.StandardServer.start(catalina-5.5.23.jar.so5pdwxe.so)
> > > >   at
> > > > org
> > > > .apache.catalina.startup.Catalina.start(catalina-
> > > > 5.5.23.jar.so5pdwxe.so)
> > > >   at java.lang.reflect.Method.invoke(libgcj.so.7rh)
> > > >   at org.apache.catalina.startup.Bootstrap.start(bootstrap.jar.so)
> > > >   at org.apache.catalina.startup.Bootstrap.main(bootstrap.jar.so)