perfSONAR User Q&A and Other Discussion

[Fausto Vetter <>]

Hi Brian,

By the way, which java version are you using? Is it SUN's or not? SUN's one 
should be used to run Tomcat.

If you check the following soft link in your linux system, it should be 
pointing to the path of the SUN SDK. If not, unlink this link and recreate 
pointing to the SUN SDK and restart tomcat. Finally, check if this solves 
your problem.

soft link: /etc/alternatives/java_sdk
should point to something like: /usr/lib/jvm/[sun jdk folder]

Cheers,
______________________________________________________________________

Mr Fausto Vetter
Network & Services Support Engineer

DANTE - www.dante.net

Tel: +44 (0)1223 371 357
Fax: +44 (0)1223 371 371
Email: 


City House, 126-130 Hills Road
Cambridge CB2 1PQ
UK
_____________________________________________________________________


> -----Original Message-----
> From: Brian Tierney 
> [mailto:]
> Sent: 24 February 2010 18:26
> To: Fausto Vetter
> Cc: Slawomir Trzaszczka; 
> 
> Subject: Re: [perfsonar-user] perfSONAR MDM install help needed
> 
> 
> On Feb 24, 2010, at 1:56 AM, Fausto Vetter wrote:
> 
> > Dear Brian,
> >
> > You can find the answer to your question about this issue in:
> http://lkamal.blogspot.com/2009/07/validatejarfile-jar-not-loaded-
> servlet.html
> >
> 
> This explains the warning message but not these:
> 
> SEVERE: Error listenerStart
> 23-Feb-10 5:28:05 PM org.apache.catalina.core.StandardContext start
> SEVERE: Context [/geant2-java-xml-ls] startup failed due to previous
> errors
> - Exception sending context destroyed event to listener instance of
> class org.perfsonar.service.base.container.listeners.
> StartupInitializer
> 
> 
> > I hope it solves your issue,
> >
> ______________________________________________________________________
> >
> > Mr Fausto Vetter
> > Network & Services Support Engineer
> >
> > DANTE - www.dante.net
> >
> > Tel: +44 (0)1223 371 357
> > Fax: +44 (0)1223 371 371
> > Email: 
> > 
> >
> > City House, 126-130 Hills Road
> > Cambridge CB2 1PQ
> > UK
> > _____________________________________________________________________
> >
> >> -----Original Message-----
> >> From: Brian Tierney 
> >> [mailto:]
> >> Sent: 24 February 2010 01:37
> >> To: Slawomir Trzaszczka
> >> Cc: 
> >> 
> >> Subject: Re: [perfsonar-user] perfSONAR MDM install help needed
> >>
> >>
> >> On Feb 22, 2010, at 11:46 PM, Slawomir Trzaszczka wrote:
> >>
> >>> Hi Brian,
> >>>
> >>> could you send me entire log file ?
> >>>
> >>
> >> Here is the entire log file. I also verified that nothing else is
> >> running on that port.
> >>
> >> Created MBeanServer with ID: 7rtuyr:g61g441r.0:odev-vm-9.es.net:1
> >> 23-Feb-10 5:27:32 PM org.apache.catalina.core.AprLifecycleListener
> >> lifecycleEvent
> >> INFO: The Apache Tomcat Native library which allows optimal
> >> performance in production environments was not found on the j
> >> ava.library.path: /usr/lib64/gcj-4.1.2
> >> 23-Feb-10 5:27:32 PM org.apache.coyote.http11.Http11BaseProtocol
> init
> >> INFO: Initializing Coyote HTTP/1.1 on http-8080
> >> 23-Feb-10 5:27:32 PM org.apache.catalina.startup.Catalina load
> >> INFO: Initialization processed in 971 ms
> >> 23-Feb-10 5:27:32 PM org.apache.catalina.core.StandardService start
> >> INFO: Starting service Catalina
> >> 23-Feb-10 5:27:32 PM org.apache.catalina.core.StandardEngine start
> >> INFO: Starting Servlet Engine: Apache Tomcat/5.5.23
> >> 23-Feb-10 5:27:32 PM org.apache.catalina.core.StandardHost start
> >> INFO: XML validation disabled
> >> 23-Feb-10 5:27:32 PM org.apache.catalina.loader.WebappClassLoader
> >> validateJarFile
> >> INFO: validateJarFile(/usr/share/tomcat5/webapps/geant2-java-xml-ls/
> >> WEB-INF/lib/servlet-api-5.0.28.jar) - jar not loaded.
> >>  See Servlet Spec 2.3, section 9.7.2. Offending class:
> javax/servlet/
> >> Servlet.class
> >> - Exception sending context initialized event to listener instance
> of
> >> class org.perfsonar.service.base.container.listener
> >> s.StartupInitializer
> >> java.lang.NoClassDefFoundError:
> >> org.perfsonar.base.auxiliary.AuxiliaryComponentManager
> >>    at java.lang.Class.initializeClass(libgcj.so.7rh)
> >>    at
> >> org
> >> .perfsonar
> >> .service
> >> .base
> >> .container.listeners.StartupInitializer.contextInitialized(Unknown
> >> Source:33)
> >>    at
> >> org
> >> .apache
> >> .catalina
> >> .core.StandardContext.listenerStart(catalina-5.5.23.jar.so5pdwxe.so)
> >>    at
> >> org
> >> .apache
> >> .catalina.core.StandardContext.start(catalina-
> 5.5.23.jar.so5pdwxe.so)
> >>    at
> >> org
> >> .apache
> >> .catalina
> >> .core.ContainerBase.addChildInternal(catalina-
> 5.5.23.jar.so5pdwxe.so)
> >>    at
> >> org
> >> .apache
> >> .catalina
> >> .core.ContainerBase.addChild(catalina-5.5.23.jar.so5pdwxe.so)
> >>    at
> >> org
> >> .apache
> >> .catalina.core.StandardHost.addChild(catalina-
> 5.5.23.jar.so5pdwxe.so)
> >>    at
> >> org
> >> .apache
> >> .catalina
> >> .startup.HostConfig.deployDirectory(catalina-5.5.23.jar.so5pdwxe.so)
> >>    at
> >> org
> >> .apache
> >> .catalina
> >> .startup
> >> .HostConfig.deployDirectories(catalina-5.5.23.jar.so5pdwxe.so)
> >>    at
> >> org
> >> .apache
> >> .catalina.startup.HostConfig.deployApps(catalina-
> >> 5.5.23.jar.so5pdwxe.so)
> >>    at
> >> org
> >> .apache
> >> .catalina.startup.HostConfig.start(catalina-5.5.23.jar.so5pdwxe.so)
> >>    at
> >> org
> >> .apache
> >> .catalina
> >> .startup.HostConfig.lifecycleEvent(catalina-5.5.23.jar.so5pdwxe.so)
> >>    at
> >> org
> >> .apache
> >> .catalina
> >> .util
> >> .LifecycleSupport.fireLifecycleEvent(catalina-
> 5.5.23.jar.so5pdwxe.so)
> >>    at
> >> org
> >> .apache
> >> .catalina.core.ContainerBase.start(catalina-5.5.23.jar.so5pdwxe.so)
> >>    at
> >> org
> >> .apache
> >> .catalina.core.StandardHost.start(catalina-5.5.23.jar.so5pdwxe.so)
> >>    at
> >> org
> >> .apache
> >> .catalina.core.ContainerBase.start(catalina-5.5.23.jar.so5pdwxe.so)
> >>    at
> >> org
> >> .apache
> >> .catalina.core.StandardEngine.start(catalina-5.5.23.jar.so5pdwxe.so)
> >>    at
> >> org
> >> .apache
> >> .catalina.core.StandardService.start(catalina-
> 5.5.23.jar.so5pdwxe.so)
> >>    at
> >> org
> >> .apache
> >> .catalina.core.StandardServer.start(catalina-5.5.23.jar.so5pdwxe.so)
> >>    at
> >> org
> >> .apache.catalina.startup.Catalina.start(catalina-
> >> 5.5.23.jar.so5pdwxe.so)
> >>    at java.lang.reflect.Method.invoke(libgcj.so.7rh)
> >>    at org.apache.catalina.startup.Bootstrap.start(bootstrap.jar.so)
> >>    at org.apache.catalina.startup.Bootstrap.main(bootstrap.jar.so)
> >> Caused by: java.lang.ClassNotFoundException:
> >> java.util.concurrent.ConcurrentMap
> >>    at
> >> org
> >> .apache
> >> .catalina
> >> .loader.WebappClassLoader.loadClass(catalina-5.5.23.jar.so5pdwxe.so)
> >>    at
> >> org
> >> .apache
> >> .catalina
> >> .loader.WebappClassLoader.loadClass(catalina-5.5.23.jar.so5pdwxe.so)
> >>    at java.lang.Class.initializeClass(libgcj.so.7rh)
> >>    ...22 more
> >>
> >> 23-Feb-10 5:28:05 PM org.apache.catalina.core.StandardContext start
> >> SEVERE: Error listenerStart
> >> 23-Feb-10 5:28:05 PM org.apache.catalina.core.StandardContext start
> >> SEVERE: Context [/geant2-java-xml-ls] startup failed due to previous
> >> errors
> >> - Exception sending context destroyed event to listener instance of
> >> class org.perfsonar.service.base.container.listeners.
> >> StartupInitializer
> >> java.lang.NoClassDefFoundError:
> >> org.perfsonar.base.auxiliary.AuxiliaryComponentManager
> >>    at java.lang.Class.initializeClass(libgcj.so.7rh)
> >>    at
> >> org
> >> .perfsonar
> >> .service
> >>
> .base.container.listeners.StartupInitializer.contextDestroyed(Unknown
> >> Source:57)
> >>    at
> >> org
> >> .apache
> >> .catalina
> >> .core.StandardContext.listenerStop(catalina-5.5.23.jar.so5pdwxe.so)
> >>    at
> >> org
> >> .apache
> >> .catalina.core.StandardContext.stop(catalina-5.5.23.jar.so5pdwxe.so)
> >>    at
> >> org
> >> .apache
> >> .catalina.core.StandardContext.start(catalina-
> 5.5.23.jar.so5pdwxe.so)
> >>    at
> >> org
> >> .apache
> >> .catalina
> >> .core.ContainerBase.addChildInternal(catalina-
> 5.5.23.jar.so5pdwxe.so)
> >>    at
> >> org
> >> .apache
> >> .catalina
> >> .core.ContainerBase.addChild(catalina-5.5.23.jar.so5pdwxe.so)
> >>    at
> >> org
> >> .apache
> >> .catalina.core.StandardHost.addChild(catalina-
> 5.5.23.jar.so5pdwxe.so)
> >>    at
> >> org
> >> .apache
> >> .catalina
> >> .startup.HostConfig.deployDirectory(catalina-5.5.23.jar.so5pdwxe.so)
> >>    at
> >> org
> >> .apache
> >> .catalina
> >> .startup
> >> .HostConfig.deployDirectories(catalina-5.5.23.jar.so5pdwxe.so)
> >>    at
> >> org
> >> .apache
> >> .catalina.startup.HostConfig.deployApps(catalina-
> >> 5.5.23.jar.so5pdwxe.so)
> >>    at
> >> org
> >> .apache
> >> .catalina.startup.HostConfig.start(catalina-5.5.23.jar.so5pdwxe.so)
> >>    at
> >> org
> >> .apache
> >> .catalina
> >> .startup.HostConfig.lifecycleEvent(catalina-5.5.23.jar.so5pdwxe.so)
> >>    at
> >> org
> >> .apache
> >> .catalina
> >> .util
> >> .LifecycleSupport.fireLifecycleEvent(catalina-
> 5.5.23.jar.so5pdwxe.so)
> >>    at
> >> org
> >> .apache
> >> .catalina.core.ContainerBase.start(catalina-5.5.23.jar.so5pdwxe.so)
> >>    at
> >> org
> >> .apache
> >> .catalina.core.StandardHost.start(catalina-5.5.23.jar.so5pdwxe.so)
> >>    at
> >> org
> >> .apache
> >> .catalina.core.ContainerBase.start(catalina-5.5.23.jar.so5pdwxe.so)
> >>    at
> >> org
> >> .apache
> >> .catalina.core.StandardEngine.start(catalina-5.5.23.jar.so5pdwxe.so)
> >>    at
> >> org
> >> .apache
> >> .catalina.core.StandardService.start(catalina-
> 5.5.23.jar.so5pdwxe.so)
> >>    at
> >> org
> >> .apache
> >> .catalina.core.StandardServer.start(catalina-5.5.23.jar.so5pdwxe.so)
> >>    at
> >> org
> >> .apache.catalina.startup.Catalina.start(catalina-
> >> 5.5.23.jar.so5pdwxe.so)
> >>    at java.lang.reflect.Method.invoke(libgcj.so.7rh)
> >>    at org.apache.catalina.startup.Bootstrap.start(bootstrap.jar.so)
> >>    at org.apache.catalina.startup.Bootstrap.main(bootstrap.jar.so)
> >>
> >>
> >>
> >>
> >