Grouper Developers Forum

[Lynn Garrison <>]

There are warning at start up from CheckJar


sources.xml groupersource id: g:gsa
sources.xml ldap source id:   ldap: ldap.properties
sources.xml groupersource id: grouperEntities
2012-02-14 13:08:12,019: [main] WARN  GrouperCheckConfig.checkJar(234) - 
 - jarfile mismatch, expecting name: 'mailapi.jar' size: 178533 manifest 
version: 1.3.2.  However the jar detected is: /usr/local/apache-tomcat-6.
0.32/webapps/grouper/WEB-INF/lib/mail-1.4.1.jar, name: mail-1.4.1.jar siz
e: 447676 manifest version: 1.4.1
2012-02-14 13:08:12,026: [main] WARN  GrouperCheckConfig.checkJar(234) - 
 - jarfile mismatch, expecting name: 'slf4j-api.jar' size: 25689 manifest
 version: 1.6.2.  However the jar detected is: /usr/local/apache-tomcat-6
.0.32/webapps/grouper/WEB-INF/lib/slf4j-api-1.6.4.jar, name: slf4j-api-1.
6.4.jar size: 25962 manifest version: 1.6.4
2012-02-14 13:08:12,027: [main] WARN  GrouperCheckConfig.checkJar(234) - 
 - jarfile mismatch, expecting name: 'slf4j-log4j12.jar' size: 9752 manif
est version: 1.6.2.  However the jar detected is: /usr/local/apache-tomca
t-6.0.32/webapps/grouper/WEB-INF/lib/slf4j-log4j12-1.6.4.jar, name: slf4j
-log4j12-1.6.4.jar size: 9748 manifest version: 1.6.4
2012-02-14 13:08:12,035: [main] WARN  GrouperCheckConfig.checkJar(234) - 
 - jarfile mismatch, expecting name: 'smtp.jar' size: 23567 manifest vers
ion: 1.3.2.  However the jar detected is: /usr/local/apache-tomcat-6.0.32
/webapps/grouper/WEB-INF/lib/mail-1.4.1.jar, name: mail-1.4.1.jar size: 4
47676 manifest version: 1.4.1
2012-02-14 13:08:12,038: [main] WARN  GrouperCheckConfig.checkJar(234) - 
 - jarfile mismatch, expecting name: 'vt-ldap.jar' size: 450697 manifest 
version: 3.3.4.  However the jar detected is: /usr/local/apache-tomcat-6.
0.32/webapps/grouper/WEB-INF/lib/vt-ldap-3.3.4.jar, name: vt-ldap-3.3.4.j
ar size: 241529 manifest version: null

On Feb 14, 2012, at 12:49 PM, Jim Fox wrote:

> 
> Also, were there any errors relating to ldap connections
> higher up in the log file?  When gsh started up?
> 
> Jim
> 
> 
> On Tue, 14 Feb 2012, Tom Zeller wrote:
> 
>> Date: Tue, 14 Feb 2012 09:47:53 -0800
>> From: Tom Zeller 
>> <>
>> To: Lynn Garrison 
>> <>
>> Cc: Grouper Dev 
>> <>
>> Subject: Re: [grouper-dev] grouper 2.1.0
>> Could you reply with sources.xml attached, please ?
>> 
>> TomZ
>> 
>> On Tue, Feb 14, 2012 at 11:31 AM, Lynn Garrison 
>> <>
>>  wrote:
>>> I installed the pre release of grouper 2.1.0 using the new ldap source
>>> adapter.  I can find subject gsh but I am having problems searching for
>>> subjects in the UI.
>>> 
>>> I get the following error.
>>> 
>>> 
>>> Error:
>>> 
>>> Unable to connect to an entity database.
>>> If you continue to encounter errors, please contact technical support.
>>> 
>>> 
>>> 
>>> Information for the grouper_error.log
>>> 
>>> Caused by: edu.internet2.middleware.subject.SourceUnavailableException:
>>> null, source: ldap, sql: null
>>> at
>>> edu.internet2.middleware.subject.provider.LdapSourceAdapter.searchHelper(LdapSourceAdapter.java:399)
>>> at
>>> edu.internet2.middleware.subject.provider.LdapSourceAdapter.searchPage(LdapSourceAdapter.java:344)
>>> at
>>> edu.internet2.middleware.grouper.subj.SourcesXmlResolver$6.callLogic(SourcesXmlResolver.java:834)
>>> ... 51 more
>>> Caused by: java.lang.NullPointerException
>>> at
>>> edu.internet2.middleware.subject.provider.LdapSourceAdapter.searchHelper(LdapSourceAdapter.java:387)
>>> ... 53 more
>>> 
>>> 2012-02-14 12:21:15,929: [TP-Processor8] ERROR
>>> NavExceptionHelper.getMessage(92) - < llg5
>>> EB50391179C2FAA62334B0449A1771CA-0005 c9f7fb7a224e479a822d681d520f729d 
>>> llg5
>>> ldap > - Missing nav key: Unable to connect to an entity database.
>>> 2012-02-14 12:23:16,048: [TP-Processor9] ERROR
>>> LdapSourceAdapter.createSubject(425) - < llg5
>>> EB50391179C2FAA62334B0449A1771CA-0007 c9f7fb7a224e479a822d681d520f729d 
>>> llg5
>>> ldap > - No value for LDAP attribute "uid". It is Grouper attribute
>>> "SubjectID".
>>> 2012-02-14 12:23:16,050: [TP-Processor9] ERROR
>>> GrouperCapableAction.execute(298) - < llg5
>>> EB50391179C2FAA62334B0449A1771CA-0007 c9f7fb7a224e479a822d681d520f729d 
>>> llg5
>>> ldap > - edu.internet2.middleware.subject.SourceUnavailableException:
>>> Exception with source: ldap, on query: 'llg5'
>>> at
>>> edu.internet2.middleware.grouper.subj.SourcesXmlResolver.findPage(SourcesXmlResolver.java:642)
>>> at
>>> edu.internet2.middleware.grouper.subj.CachingResolver.findPage(CachingResolver.java:483)
>>> at
>>> edu.internet2.middleware.grouper.subj.ValidatingResolver.findPage(ValidatingResolver.java:232)
>>> at
>>> edu.internet2.middleware.grouper.SubjectFinder.findPage(SubjectFinder.java:1298)
>>> at
>>> edu.internet2.middleware.grouper.ui.actions.DoSearchSubjectsAction.grouperExecute(DoSearchSubjectsAction.java:185)
>>> at
>>> edu.internet2.middleware.grouper.ui.actions.GrouperCapableAction$1.callback(GrouperCapableAction.java:217)
>>> at
>>> edu.internet2.middleware.grouper.internal.dao.hib3.Hib3TransactionDAO$1.callback(Hib3TransactionDAO.java:51)
>>> at
>>> edu.internet2.middleware.grouper.hibernate.HibernateSession.callbackHibernateSession(HibernateSession.java:500)
>>> at
>>> edu.internet2.middleware.grouper.internal.dao.hib3.Hib3TransactionDAO.transactionCallback(Hib3TransactionDAO.java:41)
>>> at
>>> edu.internet2.middleware.grouper.hibernate.GrouperTransaction.callbackGrouperTransaction(GrouperTransaction.java:72)
>>> at
>>> edu.internet2.middleware.grouper.hibernate.GrouperTransaction.callbackGrouperTransaction(GrouperTransaction.java:91)
>>> at
>>> edu.internet2.middleware.grouper.ui.actions.GrouperCapableAction.grouperTransactionExecute(GrouperCapableAction.java:214)
>>> at
>>> edu.internet2.middleware.grouper.ui.actions.GrouperCapableAction.execute(GrouperCapableAction.java:279)
>>> at
>>> org.apache.struts.action.RequestProcessor.processActionPerform(RequestProcessor.java:424)
>>> at
>>> org.apache.struts.action.RequestProcessor.process(RequestProcessor.java:226)
>>> at org.apache.struts.action.ActionServlet.process(ActionServlet.java:1164)
>>> at org.apache.struts.action.ActionServlet.doPost(ActionServlet.java:415)
>>> at javax.servlet.http.HttpServlet.service(HttpServlet.java:637)
>>> at javax.servlet.http.HttpServlet.service(HttpServlet.java:717)
>>> at
>>> org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290)
>>> at
>>> org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
>>> at
>>> edu.internet2.middleware.grouper.ui.LoginCheckFilter$1.callback(LoginCheckFilter.java:173)
>>> at
>>> edu.internet2.middleware.grouper.GrouperSession.callbackGrouperSession(GrouperSession.java:645)
>>> at
>>> edu.internet2.middleware.grouper.ui.LoginCheckFilter.doFilter(LoginCheckFilter.java:168)
>>> at
>>> org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
>>> at
>>> org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
>>> at
>>> edu.internet2.middleware.grouper.ui.ErrorFilter.doFilter(ErrorFilter.java:132)
>>> at
>>> org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
>>> at
>>> org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
>>> at
>>> edu.internet2.middleware.grouper.ui.GrouperUiFilter.doFilter(GrouperUiFilter.java:804)
>>> at
>>> org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
>>> at
>>> org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
>>> at
>>> org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:219)
>>> at
>>> org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191)
>>> at
>>> org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:470)
>>> at
>>> org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127)
>>> at
>>> org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102)
>>> at
>>> org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109)
>>> at
>>> org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:298)
>>> at org.apache.jk.server.JkCoyoteHandler.invoke(JkCoyoteHandler.java:190)
>>> at org.apache.jk.common.HandlerRequest.invoke(HandlerRequest.java:291)
>>> at org.apache.jk.common.ChannelSocket.invoke(ChannelSocket.java:776)
>>> at
>>> org.apache.jk.common.ChannelSocket.processConnection(ChannelSocket.java:705)
>>> at
>>> org.apache.jk.common.ChannelSocket$SocketConnection.runIt(ChannelSocket.java:898)
>>> at
>>> org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPool.java:690)
>>> at java.lang.Thread.run(Thread.java:662)
>>> Caused by: edu.internet2.middleware.subject.SourceUnavailableException:
>>> null, source: ldap, sql: null
>>> at
>>> edu.internet2.middleware.subject.provider.LdapSourceAdapter.searchHelper(LdapSourceAdapter.java:399)
>>> at
>>> edu.internet2.middleware.subject.provider.LdapSourceAdapter.searchPage(LdapSourceAdapter.java:344)
>>> at
>>> edu.internet2.middleware.grouper.subj.SourcesXmlResolver.findPage(SourcesXmlResolver.java:608)
>>> ... 45 more
>>> Caused by: java.lang.NullPointerException
>>> at
>>> edu.internet2.middleware.subject.provider.LdapSourceAdapter.searchHelper(LdapSourceAdapter.java:387)
>>> ... 47 more
>>> 
>>> 2012-02-14 12:23:16,050: [TP-Processor9] ERROR
>>> NavExceptionHelper.getMessage(92) - < llg5
>>> EB50391179C2FAA62334B0449A1771CA-0007 c9f7fb7a224e479a822d681d520f729d 
>>> llg5
>>> ldap > - Missing nav key: Unable to connect to an entity database.
>>> 
>>> 
>>> Any suggestions?
>>> 
>>> Thanks
>>> Lynn
>>> 
>>> 

Lynn