Grouper Users - Open Discussion List

[Keith Hazelton <>]

also looking at: 
https://spaces.internet2.edu/display/Grouper/subject-0.3.1-doc    --k
______________
On Jan 11, 2013, at 07:30:46, Keith Hazelton wrote:

> On Jan 11, 2013, at 07:20:34, 
> 
>  wrote:
> 
>> Well, it says you need to specify a sort column in the sources.xml, ans 
>> maybe a search column too.  
> 
> I can't find documentation that spells out the sort/search column whys and 
> hows.  I'm reading the following:
> 
> https://spaces.internet2.edu/display/Grouper/Grouper+book+-+Connecting+to+a+subject+source
> https://spaces.internet2.edu/display/Grouper/subject-0.2.1-doc
> 
>> Also, the is a postgres error in there about permissions, does the 
>> connecting user have permissions in the db? 
> 
> Yes, the bbsubjectdb uses the same user ("grouper") & privileges (GRANT ALL 
> PRIVILEGES ON DATABASE bbsubjectdb TO grouper;) defined for the main 
> Grouper database.
> 
>       --Keith
> 
>> 
>> Thanks
>> Chris
>> 
>> 
>> ----- Reply message -----
>> From: "Keith Hazelton" 
>> <>
>> To: 
>> <>
>> Subject: [grouper-users] Help debugging new jdbc subject adapter
>> Date: Fri, Jan 11, 2013 7:38 am
>> 
>> 
>> Thanks.  I get an error on startup with gsh and it indicates something 
>> wrong with the subject db setup.  I'm sure it's simple...     --Keith
>> 
>> this:
>> 
>> sources.xml jdbc source id:   postgresSubjectSource: 
>> grouper@jdbc:postgresql://localhost:5432/bbsubjectdb
>> Subject API error: error with subject source id: postgresSubjectSource, 
>> name: Subject JDBC Source Adapter, problem with getSubject by id, in 
>> sources.xml: search searchSubject: , 
>> edu.internet2.middleware.subject.SourceUnavailableException: problem in 
>> sources.xml source: postgresSubjectSource, sql: select name, description 
>> FROM bbsubject WHERE bpid = ?, grouperTestSubjectByIdOnStartupASDFGHJ, 
>> searchSubject
>> 
>> and then this:
>> 
>> Couldnt startup grouper: At least one sort column should be specified for 
>> source postgresSubjectSource
>> java.lang.RuntimeException: At least one sort column should be specified 
>> for source postgresSubjectSource
>> 
>> full console log below.
>> 
>> (Note: I changed the searchSubject query in sources.xml so the WHERE 
>> clause uses bpid (primary key) rather than name, but I get the same result 
>> in either case)
>> 
>> ----------
>> [root@arche
>>  bin]# ./gsh.sh
>> Using GROUPER_HOME: /opt/grouper-2.1.2/grouper.apiBinary-2.1.2/bin/..
>> Using GROUPER_CONF: /opt/grouper-2.1.2/grouper.apiBinary-2.1.2/bin/../conf
>> Using JAVA: /usr/lib/jvm/java-1.6.0-openjdk/bin/java
>> using MEMORY: 64m-750m
>> Grouper starting up: version: 2.1.2, build date: 2012/08/14 15:02:01, env: 
>> <no label configured>
>> grouper.properties read from: 
>> /opt/grouper-2.1.2/grouper.apiBinary-2.1.2/conf/grouper.properties
>> Grouper current directory is: 
>> /opt/grouper-2.1.2/grouper.apiBinary-2.1.2/bin
>> log4j.properties read from:   
>> /opt/grouper-2.1.2/grouper.apiBinary-2.1.2/conf/log4j.properties
>> Grouper is logging to file:   
>> /opt/grouper-2.1.2/grouper.apiBinary-2.1.2/bin/../logs/grouper_error.log, 
>> at min level WARN for package: edu.internet2.middleware.grouper, based on 
>> log4j.properties
>> grouper.hibernate.properties: 
>> /opt/grouper-2.1.2/grouper.apiBinary-2.1.2/conf/grouper.hibernate.properties
>> grouper.hibernate.properties: 
>> grouper@jdbc:postgresql://localhost:5432/grouperdb
>> sources.xml read from:        
>> /opt/grouper-2.1.2/grouper.apiBinary-2.1.2/conf/sources.xml
>> sources.xml groupersource id: g:gsa
>> sources.xml groupersource id: grouperEntities
>> sources.xml jdbc source id:   postgresSubjectSource: 
>> grouper@jdbc:postgresql://localhost:5432/bbsubjectdb
>> Subject API error: error with subject source id: postgresSubjectSource, 
>> name: Subject JDBC Source Adapter, problem with getSubject by id, in 
>> sources.xml: search searchSubject: , 
>> edu.internet2.middleware.subject.SourceUnavailableException: problem in 
>> sources.xml source: postgresSubjectSource, sql: select name, description 
>> FROM bbsubject WHERE bpid = ?, grouperTestSubjectByIdOnStartupASDFGHJ, 
>> searchSubject
>> at 
>> edu.internet2.middleware.subject.provider.JDBCSourceAdapter.uniqueSearch(JDBCSourceAdapter.java:279)
>> at 
>> edu.internet2.middleware.subject.provider.JDBCSourceAdapter.getSubject(JDBCSourceAdapter.java:193)
>> at 
>> edu.internet2.middleware.subject.SubjectCheckConfig.checkConfig(SubjectCheckConfig.java:111)
>> at 
>> edu.internet2.middleware.grouper.misc.GrouperCheckConfig$1.callback(GrouperCheckConfig.java:443)
>> at 
>> edu.internet2.middleware.grouper.GrouperSession.callbackGrouperSession(GrouperSession.java:801)
>> at 
>> edu.internet2.middleware.grouper.misc.GrouperCheckConfig.checkConfig(GrouperCheckConfig.java:439)
>> at 
>> edu.internet2.middleware.grouper.misc.GrouperStartup.startup(GrouperStartup.java:132)
>> at 
>> edu.internet2.middleware.grouper.app.gsh.GrouperShell.main(GrouperShell.java:151)
>> at 
>> edu.internet2.middleware.grouper.app.gsh.GrouperShellWrapper.main(GrouperShellWrapper.java:31)
>> Caused by: org.postgresql.util.PSQLException: ERROR: permission denied for 
>> relation bbsubject
>> at 
>> org.postgresql.core.v3.QueryExecutorImpl.receiveErrorResponse(QueryExecutorImpl.java:1592)
>> at 
>> org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1327)
>> at 
>> org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:192)
>> at 
>> org.postgresql.jdbc2.AbstractJdbc2Statement.execute(AbstractJdbc2Statement.java:451)
>> at 
>> org.postgresql.jdbc2.AbstractJdbc2Statement.executeWithFlags(AbstractJdbc2Statement.java:350)
>> at 
>> org.postgresql.jdbc2.AbstractJdbc2Statement.executeQuery(AbstractJdbc2Statement.java:254)
>> at 
>> com.mchange.v2.c3p0.impl.NewProxyPreparedStatement.executeQuery(NewProxyPreparedStatement.java:76)
>> at 
>> edu.internet2.middleware.subject.provider.JDBCSourceAdapter.getSqlResults(JDBCSourceAdapter.java:625)
>> at 
>> edu.internet2.middleware.subject.provider.JDBCSourceAdapter.uniqueSearch(JDBCSourceAdapter.java:268)
>> ... 8 more
>> 
>> Couldnt startup grouper: At least one sort column should be specified for 
>> source postgresSubjectSource
>> java.lang.RuntimeException: At least one sort column should be specified 
>> for source postgresSubjectSource
>> at 
>> edu.internet2.middleware.grouper.misc.GrouperStartup.verifyMemberSortAndSearchConfig(GrouperStartup.java:177)
>> at 
>> edu.internet2.middleware.grouper.misc.GrouperStartup.startup(GrouperStartup.java:153)
>> at 
>> edu.internet2.middleware.grouper.app.gsh.GrouperShell.main(GrouperShell.java:151)
>> at 
>> edu.internet2.middleware.grouper.app.gsh.GrouperShellWrapper.main(GrouperShellWrapper.java:31)
>> Exception in thread "main" java.lang.RuntimeException: At least one sort 
>> column should be specified for source postgresSubjectSource
>> at 
>> edu.internet2.middleware.grouper.misc.GrouperStartup.verifyMemberSortAndSearchConfig(GrouperStartup.java:177)
>> at 
>> edu.internet2.middleware.grouper.misc.GrouperStartup.startup(GrouperStartup.java:153)
>> at 
>> edu.internet2.middleware.grouper.app.gsh.GrouperShell.main(GrouperShell.java:151)
>> at 
>> edu.internet2.middleware.grouper.app.gsh.GrouperShellWrapper.main(GrouperShellWrapper.java:31)
>> [root@arche
>>  bin]# 
>> ----------
>> 
>> 
>> On Jan 10, 2013, at 22:12:36, Chris Hyzer wrote:
>> 
>>> I would try GSH and do the various subject searches, by id, identifier, 
>>> and search.  When it fails, look in logs and see if the error helps.  If 
>>> not, forward that error / stack / log messages to the list.
>>> 
>>> Thanks,
>>> Chris
>>> 
>>> -----Original Message-----
>>> From: 
>>> 
>>>  
>>> [mailto:]
>>>  
>>> Sent: Thursday, January 10, 2013 3:05 PM
>>> To: 
>>> 
>>> Subject: [grouper-users] Help debugging new jdbc subject adapter
>>> 
>>> I'm creating an alternative subject source for the Project Bamboo 
>>> instance of Grouper. I've gotten the database and a subject table created 
>>> and populated (see first snippet below) and I modified the sources.xml 
>>> file to point to that database and table and do the proper searches (see 
>>> second snippet). I bounced the Tomcat instance hosting Grouper on 
>>> arche.metazome.info and tried to add a subject to a group. I typed in a 
>>> name, hit search and got "Error: Unable to connect to to an entity 
>>> database".
>>> 
>>> 
>>> Looking for advice on how to troubleshoot this. I didn't see anything in 
>>> the tomcat or grouper logs.
>>> 
>>> 
>>> ----------
>>> postgres=# create database bbsubjectdb;
>>> CREATE DATABASE
>>> postgres=# GRANT ALL PRIVILEGES ON DATABASE bbsubjectdb TO grouper;
>>> GRANT
>>> postgres=# \c bbsubjectdb
>>> psql (8.4.13, server 8.4.12)
>>> You are now connected to database "bbsubjectdb".
>>> 
>>> 
>>> bbsubjectdb=# CREATE TABLE bbsubject (
>>> bbsubjectdb(# BPId character varying (40) PRIMARY KEY,
>>> bbsubjectdb(# name character varying (255) NOT NULL,
>>> bbsubjectdb(# description character varying (255) );
>>> NOTICE: CREATE TABLE / PRIMARY KEY will create implicit index 
>>> "bbsubject_pkey" for table "bbsubject"
>>> CREATE TABLE
>>> 
>>> 
>>> bbsubjectdb=# insert into bbsubject(BPId, name, description)
>>> bbsubjectdb-# values ('04574969-e851-4fbf-8535-0b81b9b3f2f3', 'earnest 
>>> adams', 'Ernie from the Voronoi Project');
>>> INSERT 0 1
>>> bbsubjectdb=# insert into bbsubject(BPId, name, description)
>>> bbsubjectdb-# values ('c00f294d-651b-495b-9633-a900dd1a7418', 'fred 
>>> farkle', 'Freddie from the Voronoi Project');
>>> INSERT 0 1
>>> bbsubjectdb=# select * from bbsubject;
>>> bpid | name | description 
>>> --------------------------------------+---------------+----------------------------------
>>> 04574969-e851-4fbf-8535-0b81b9b3f2f3 | earnest adams | Ernie from the 
>>> Voronoi Project
>>> c00f294d-651b-495b-9633-a900dd1a7418 | fred farkle | Freddie from the 
>>> Voronoi Project
>>> (2 rows)
>>> 
>>> 
>>> bbsubjectdb=# select name, description FROM bbsubject WHERE name ILIKE 
>>> '%earnest%';
>>> name | description 
>>> ---------------+--------------------------------
>>> earnest adams | Ernie from the Voronoi Project
>>> (1 row)
>>> 
>>> 
>>> ----------
>>> <?xml version="1.0" encoding="utf-8"?>
>>> 
>>> 
>>> <!--
>>> Grouper's subject resolver configuration
>>> $Id: sources.example.xml,v 1.8 2009-08-11 20:18:09 mchyzer Exp $
>>> -->
>>> 
>>> 
>>> <sources>
>>> 
>>> 
>>> <!-- Group Subject Resolver -->
>>> 
>>> ...<snip>...
>>> 
>>> 
>>> <!-- khazelton 2013-01-10 Alternative Entity Subject Resolver for Bamboo 
>>> -->
>>> 
>>> 
>>> <source 
>>> adapterClass="edu.internet2.middleware.grouper.subj.GrouperJdbcSourceAdapter">
>>> <id>postgresSubjectSource</id>
>>> <name>Subject JDBC Source Adapter</name>
>>> <type>person</type>
>>> <init-param>
>>> <param-name>jdbcConnectionProvider</param-name>
>>> <param-value>edu.internet2.middleware.subject.provider.C3p0JdbcConnectionProvider</param-value>
>>> </init-param>
>>> <init-param>
>>> <param-name>maxActive</param-name>
>>> <param-value>16</param-value>
>>> </init-param>
>>> <init-param>
>>> <param-name>maxIdle</param-name>
>>> <param-value>16</param-value>
>>> </init-param>
>>> <init-param>
>>> <param-name>maxWait</param-name>
>>> <param-value>-1</param-value>
>>> </init-param>
>>> 
>>> <init-param>
>>> <param-name>dbDriver</param-name>
>>> <param-value>org.postgresql.Driver</param-value>
>>> </init-param> 
>>> <init-param>
>>> <param-name>dbUrl</param-name>
>>> <param-value>jdbc:postgresql://localhost:5432/bbsubjectdb</param-value>
>>> </init-param>
>>> <init-param>
>>> <param-name>dbUser</param-name>
>>> <param-value>xxxxxx</param-value>
>>> </init-param>
>>> <init-param>
>>> <param-name>dbPwd</param-name>
>>> <param-value>yyyyyyyy</param-value>
>>> </init-param>
>>> 
>>> <init-param>
>>> <param-name>SubjectID_AttributeType</param-name>
>>> <param-value>bpid</param-value>
>>> </init-param>
>>> <init-param>
>>> <param-name>Name_AttributeType</param-name>
>>> <param-value>name</param-value>
>>> </init-param>
>>> <init-param>
>>> <param-name>Description_AttributeType</param-name>
>>> <param-value>description</param-value>
>>> </init-param>
>>> 
>>> <search>
>>> <searchType>searchSubject</searchType>
>>> <param>
>>> <param-name>sql</param-name>
>>> <param-value>
>>> select name, description FROM bbsubject WHERE name = ?
>>> </param-value>
>>> </param>
>>> </search>
>>> <search>
>>> <searchType>searchSubjectByIdentifier</searchType>
>>> <param>
>>> <param-name>sql</param-name>
>>> <param-value>
>>> select name, description FROM bbsubject WHERE bpid = ?
>>> </param-value>
>>> </param>
>>> </search>
>>> <search>
>>> <searchType>search</searchType>
>>> <param>
>>> <param-name>sql</param-name>
>>> <param-value>
>>> select name, description FROM bbsubject WHERE name ILIKE '%' || ? || '%'
>>> </param-value>
>>> </param>
>>> </search>
>>> </source>
>>> <!-- end khazelton insert 10-Jan-2013 -->
>>> 
>>> 
>>> </sources>
>>> 
>>> 
>>> ----------
>> 
>