Grouper Users - Open Discussion List

After configuring and testing with 1.3.1 for a bit now, in trying to switch 
over to 1.4.0 I'm experiencing issues with mysql drivers. I have placed the 
same mysql driver used in 1.3.1 in the lib/custom directory, but still get 
this error when trying to init by any means possible... I'm pretty sure I've 
checked all my bases, but are there any suggestions as to the cause of this 
issue?

Couldnt startup grouper: Problems with db: DB: user: grouper , url: 
jdbc:mysql://my.actual.host.edu:3306/grouper , driver: com.mysql.jdbc.Driver 
java.lang.RuntimeException: Problems with db: DB: user: grouper , url: 
jdbc:mysql://my.actual.host.edu:3306/grouper , driver: com.mysql.jdbc.Driver 
        at 
edu.internet2.middleware.grouper.app.loader.db.GrouperLoaderDb.connection(GrouperLoaderDb.java:40)
        at 
edu.internet2.middleware.grouper.ddl.GrouperDdlUtils.bootstrapHelper(GrouperDdlUtils.java:308)
        at 
edu.internet2.middleware.grouper.ddl.GrouperDdlUtils.bootstrap(GrouperDdlUtils.java:216)
        at 
edu.internet2.middleware.grouper.misc.GrouperStartup.startup(GrouperStartup.java:77)
        at 
edu.internet2.middleware.grouper.app.gsh.GrouperShell.main(GrouperShell.java:112)
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at 
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
        at 
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
        at java.lang.reflect.Method.invoke(Method.java:585)
        at com.dawidweiss.invoker.Invoker.loader(Invoker.java:167)
        at com.dawidweiss.invoker.Invoker.main(Invoker.java:303)
Caused by: java.lang.ClassNotFoundException: com.mysql.jdbc.Driver 
        at 
com.dawidweiss.util.lang.AdaptiveClassLoader.loadClass(AdaptiveClassLoader.java:516)
        at java.lang.ClassLoader.loadClass(ClassLoader.java:251)
        at java.lang.ClassLoader.loadClassInternal(ClassLoader.java:319)
        at java.lang.Class.forName0(Native Method)
        at java.lang.Class.forName(Class.java:164)
        at 
edu.internet2.middleware.grouper.app.loader.db.GrouperLoaderDb.connection(GrouperLoaderDb.java:34)
        ... 10 more
[com.dawidweiss.invoker.Invoker] 
edu.internet2.middleware.grouper.app.gsh.GrouperShell has thrown an exception.
java.lang.RuntimeException: Problems with db: DB: user: grouper , url: 
jdbc:mysql://my.actual.host.edu:3306/grouper , driver: com.mysql.jdbc.Driver 
        at 
edu.internet2.middleware.grouper.app.loader.db.GrouperLoaderDb.connection(GrouperLoaderDb.java:40)
        at 
edu.internet2.middleware.grouper.ddl.GrouperDdlUtils.bootstrapHelper(GrouperDdlUtils.java:308)
        at 
edu.internet2.middleware.grouper.ddl.GrouperDdlUtils.bootstrap(GrouperDdlUtils.java:216)
        at 
edu.internet2.middleware.grouper.misc.GrouperStartup.startup(GrouperStartup.java:77)
        at 
edu.internet2.middleware.grouper.app.gsh.GrouperShell.main(GrouperShell.java:112)
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at 
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
        at 
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
        at java.lang.reflect.Method.invoke(Method.java:585)
        at com.dawidweiss.invoker.Invoker.loader(Invoker.java:167)
        at com.dawidweiss.invoker.Invoker.main(Invoker.java:303)
Caused by: java.lang.ClassNotFoundException: com.mysql.jdbc.Driver 
        at 
com.dawidweiss.util.lang.AdaptiveClassLoader.loadClass(AdaptiveClassLoader.java:516)
        at java.lang.ClassLoader.loadClass(ClassLoader.java:251)
        at java.lang.ClassLoader.loadClassInternal(ClassLoader.java:319)
        at java.lang.Class.forName0(Native Method)
        at java.lang.Class.forName(Class.java:164)
        at 
edu.internet2.middleware.grouper.app.loader.db.GrouperLoaderDb.connection(GrouperLoaderDb.java:34)
        ... 10 more

I'm also getting these in the logs, which I thought was taken care of in 
earlier versions... ?

2009-01-13 13:48:13,046: [main] WARN  GrouperJdbcConnectionProvider.init(88) 
- shouldnt set driver for GrouperJdbcConnectionProvider: jdbc, 
com.mysql.jdbc.Driver
2009-01-13 13:48:13,048: [main] WARN  GrouperJdbcConnectionProvider.init(92) 
- shouldnt set maxActive for GrouperJdbcConnectionProvider: jdbc, 16
2009-01-13 13:48:13,049: [main] WARN  GrouperJdbcConnectionProvider.init(96) 
- shouldnt set maxIdle for GrouperJdbcConnectionProvider: jdbc, 16
2009-01-13 13:48:13,051: [main] WARN  GrouperJdbcConnectionProvider.init(100) 
- shouldnt set maxWaitSeconds for GrouperJdbcConnectionProvider: jdbc, -1
2009-01-13 13:48:13,053: [main] WARN  GrouperJdbcConnectionProvider.init(104) 
- shouldnt set dbUrl for GrouperJdbcConnectionProvider: jdbc, 
jdbc:mysql://my.actual.host.edu:3306/grouper
2009-01-13 13:48:13,054: [main] WARN  GrouperJdbcConnectionProvider.init(108) 
- shouldnt set dbUser for GrouperJdbcConnectionProvider: jdbc, grouper
2009-01-13 13:48:13,055: [main] WARN  GrouperJdbcConnectionProvider.init(112) 
- shouldnt set dbPassword for GrouperJdbcConnectionProvider: jdbc
2009-01-13 13:48:13,075: [main] WARN  ApiConfig.printConfigOnce(186) - 
Grouper starting up: version: 1.4.0, build date: 2009/01/13 13:48:05, env: dev