Grouper Users - Open Discussion List

["Pete St. Onge" <>]

Hi Chad,

This was it exactly, I reverted to Java 1.8 and was able to complete the 
installation.

Many thanks! -- pete

On 2019-09-26 8:59 a.m., Redman, Chad wrote:
> Are you on Java 11 by chance? We're working on that for 2.5, but not there 
> yet. You can add these jars manually which are no longer in the Java 11 
> distribution:
>
> javax.xml.bind:jaxb-api:2.3.1
> com.sun.xml.bind:jaxb-impl:2.3.2
> com.sun.xml.bind:jaxb-core:2.3.0.1
>
> For gsh to work, you may need to replace groovy-all-2.5.0-beta-2.jar with 
> some or all of the groovy-* jars that are now split up into smaller 
> components instead of one big jar file. We haven't identified which of them 
> are necessary yet. Testing so far also indicates upgrading to 
> javassist:3.24.1-GA.jar.
>
> -Chad
>
>
> -----Original Message-----
> From:  
> [] On Behalf Of Pete St. Onge
> Sent: Thursday, September 26, 2019 8:27 AM
> To: 
> Subject: [grouper-users] 2.4.x installer fails, Problem reading config: 
> 'database:grouper'
>
> Hello all,
>
> My google-fu hasn't yet proven fruitful, so here goes.
>
> I'm trying to install 2.4 current (all patches), on a CentOS VM in our
> dev environment, but the process fails.
>
> My previous installation in a proof of concept environment (Ubuntu VM on
> VirtualBox) went fine.
>
> The grouper config table in both instances is empty, and the 'sa' user
> has ownership and privs on the PostgreSQL database used for Grouper as
> well as all of the tables & views.
>
> .Sep. 26, 2019 8:17:37 A.M.
> edu.internet2.middleware.grouperInstaller.util.GrouperInstallerUtils
> execCommandHelper
> SEVERE: Process exit status=1: out: Detected Grouper directory structure
> 'api' (valid is api or webapp)
> Using GROUPER_HOME:           /opt/grouper/2.4.0/grouper.apiBinary-2.4.0
> Using GROUPER_CONF:
> /opt/grouper/2.4.0/grouper.apiBinary-2.4.0/conf
> Using JAVA:                   java
> Using CLASSPATH:
> /opt/grouper/2.4.0/grouper.apiBinary-2.4.0/conf:/opt/grouper/2.4.0/grouper.apiBinary-2.4.0/dist/lib/grouper.jar:/opt/grouper/2.4.0/grouper.apiBinary-2.4.0/lib/grouper/*:/opt/grouper/2.4.0/grouper.apiBinary-2.4.0/lib/custom/*:/opt/grouper/2.4.0/grouper.apiBinary-2.4.0/lib/jdbcSamples/*:/opt/grouper/2.4.0/grouper.apiBinary-2.4.0/lib/ant/*:/opt/grouper/2.4.0/grouper.apiBinary-2.4.0/lib/test/*:/opt/grouper/2.4.0/grouper.apiBinary-2.4.0/dist/lib/test/*:/opt/grouper/2.4.0/grouper.apiBinary-2.4.0/src/resources
> using MEMORY:                 64m-750m
> Grouper starting up: version: 2.4.0, build date: null, env: <no label
> configured>
> grouperPatchStatus read from:
> /opt/grouper/2.4.0/grouper.apiBinary-2.4.0/grouperPatchStatus.properties
> api patches installed:        0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,
> 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30,
> 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48,
> 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66,
> 67, 68, 69, 70, 71, 72, 73
> grouper.properties read from:
> /opt/grouper/2.4.0/grouper.apiBinary-2.4.0/conf/grouper.properties
> Grouper current directory is: /opt/grouper/2.4.0/grouper.apiBinary-2.4.0
> log4j.properties read from:
> /opt/grouper/2.4.0/grouper.apiBinary-2.4.0/conf/log4j.properties
> Grouper is logging to file:
> /opt/grouper/2.4.0/grouper.apiBinary-2.4.0/logs/grouper_error.log, at
> min level WARN for package: edu.internet2.middleware.grouper, based on
> log4j.properties
> grouper.hibernate.properties:
> /opt/grouper/2.4.0/grouper.apiBinary-2.4.0/conf/grouper.hibernate.properties
> grouper.hibernate.properties: sa@jdbc:postgresql://localhost:5432/grouper240
> subject.properties read from:
> /opt/grouper/2.4.0/grouper.apiBinary-2.4.0/conf/subject.properties
> sources configured in:        subject.properties
> subject.properties groupersource id: g:gsa
> subject.properties ldap source id:   ldap: utorable
> subject.properties groupersource id: grouperEntities
> Script was executed successfully
>
> , err: log4j:WARN No such property [maxBackupIndex] in
> org.apache.log4j.DailyRollingFileAppender.
> WARNING: An illegal reflective access operation has occurred
> WARNING: Illegal reflective access by org.postgresql.jdbc.TimestampUtils
> (file:/opt/grouper/2.4.0/grouper.apiBinary-2.4.0/lib/jdbcSamples/postgresql-42.1.4.jar)
> to field java.util.TimeZone.defaultTimeZone
> WARNING: Please consider reporting this to the maintainers of
> org.postgresql.jdbc.TimestampUtils
> WARNING: Use --illegal-access=warn to enable warnings of further illegal
> reflective access operations
> WARNING: All illegal access operations will be denied in a future release
> Grouper ddl object type 'Grouper' has dbVersion: 0 and java version: 31
> Grouper ddl object type 'Subject' has dbVersion: 0 and java version: 1
> Grouper database schema DDL requires updates
> (should run script manually and carefully, in sections, verify data
> before drop statements, backup/export important data before starting,
> follow change log on confluence, dont run exact same script in multiple
> envs - generate a new one for each env),
> script file is:
> /opt/grouper/2.4.0/grouper.apiBinary-2.4.0/ddlScripts/grouperDdl_20190926_08_17_29_646.sql
> edu.internet2.middleware.grouper.exception.GrouperException: unable to
> initialize registry: unable to retrieve GrouperSystem: Problem reading
> config: 'database:grouper'
> [...]
> Caused by: edu.internet2.middleware.grouper.exception.GrouperException:
> unable to retrieve GrouperSystem: Problem reading config: 'database:grouper'
> [...]
> Caused by: java.lang.RuntimeException: Problem reading config:
> 'database:grouper'
> [...]
> Caused by: java.lang.RuntimeException: unable to initialize hibernate:
> javax/xml/bind/JAXBException,
> configFileName: grouper.properties,
> Erroroperation: getDatabaseConfigsOrFromCache, configFileName:
> grouper.properties, hasDatabaseConfig: true, cacheForSeconds: 120,
> needsReload: true, needsReload2: true, initted: true, exception:
> java.lang.RuntimeException: unable to initialize hibernate:
> javax/xml/bind/JAXBException
>
> Thanks in advance, -- pete


--
Peter St. Onge                           
Information Security Architect                     (416)978-5030
Business Continuity and Communications
Information + Technology Services          University of Toronto