Agreed. That would be a very nice feature.
Would time-based deletes be based on create-date or last-mod-date? There seems to be a difference between these in the grouper_audit_entry table, though I'm
not sure why a log record or point-in-time record would ever be modified.
Thanks,
Rory
From: Gail H Lift [mailto:]
Sent: Wednesday, January 31, 2018 11:06 AM
To: David Langenberg <>
Cc: Hyzer, Chris <>; Rory Larson <>; Shilen Patel <>;
Subject: Re: [grouper-users] Maintaining Grouper database size
Sounds good here too. The configurable time intervals will make it easy to adjust to local needs.
On Wed, Jan 31, 2018 at 11:55 AM, David Langenberg <> wrote:
Sounds good to us. We'd appreciate those maint jobs.
Dave
--
David Langenberg
Asst Director, Identity Management
The University of Chicago
On 1/31/18, 10:50 AM, " on behalf of Hyzer, Chris" <
on behalf of > wrote:
For audit records (this is the grouper_audit_entry_v):
Penn currently has 11,685,969 records in grouper_audit_entry_v
addGroupMemberhip and deleteGroupMembership has 80% of the entries
99% of entries have no logged_in_subject_id
99% are loader, blank, grouperShell
70k (less than 1% are from UI)
How about a daemon that:
Deletes records older than a year (month? Would be configurable) that have no logged in subject id (not tied to a user doing something)
Deletes records older than a year (configurable) which are loader, blank, or grouperShell system
There isn’t much left, but we could delete any record over 5 years if people want (we have 90k records older than 5 years which are grouperUI or grouperWS)
https://bugs.internet2.edu/jira/browse/GRP-1674
#####################
For PIT Penn has 10 million memberships in the PIT table.
7.5 million (at least) are loader jobs
5 million of loader jobs older than 2 years
How about a daemon that deletes all over 5 (configurable) years old, and loader data older than 2 (configurable) years?
Thoughts?
Thanks
Chris
-----Original Message-----
From: Rory Larson [mailto:]
Sent: Monday, January 29, 2018 4:22 PM
To: Hyzer, Chris <>; Shilen Patel <>
Cc:
Subject: RE: [grouper-users] Maintaining Grouper database size
Well, there is a "created_on" and a "last_updated" field, which are apparently Unix-type dates. That would make it possible to delete everything in the table prior to a chosen date. There's also "server_user_name", which gives the account that ran the
transaction, e.g., myself vs. the grouperLoader. That would let us delete only the ones that were run regularly under the grouperLoader, and keep the changes made by individual users. I'm not sure how worried we should be about keeping that information.
On a 40 GB table, how long would a selected DML delete take? And if we do it that way, we are still left with a huge table, because MySQL only marks records for deletion without actually deleting them. In fact, wouldn't it just make the table bigger by adding
all the deletion transactions?
Thanks,
Rory
-----Original Message-----
From: Hyzer, Chris [mailto:]
Sent: Monday, January 29, 2018 2:45 PM
To: Rory Larson <>; Shilen Patel <>
Cc:
Subject: RE: [grouper-users] Maintaining Grouper database size
Is there a way to look at the data of the audit table and see which records to delete? I think any loader jobs audits can be deleted (GrouperSystem is the entity?), but things users do through the UI for example should be kept so you know who did what.
Make sense? Take a look and see if anything jumps out or we can look at our audit tables too...
Thanks
Chris
-----Original Message-----
From: Rory Larson [mailto:]
Sent: Monday, January 29, 2018 3:42 PM
To: Hyzer, Chris <>; Shilen Patel <>
Cc:
Subject: RE: [grouper-users] Maintaining Grouper database size
Thanks, all, for the suggestions. I think I'm hearing that I don't want to purge data from large point-in-time tables manually through SQL. Instead, I should run an edu.internet2.middleware.grouper... command under gsh, such as:
edu.internet2.middleware.grouper.pit.PITUtils.deleteInactiveRecords(new Date(), true); or
edu.internet2.middleware.grouper.pit.PITUtils.deleteInactiveObjectsInStem("my:stem", true);
This will eliminate inactive records or objects only, meaning that if the people are still around, they will still be taking up space with point-in-time data going back perhaps for many years, correct? And additionally, we would still have to perform an
OPTIMIZE TABLE on each PIT table to (possibly) realize any gains?
I will plan to do this, but I'm unsure of how much space, if any, I'm likely to recover.
Another suggestion was made off-line, that I should perform a TRUNCATE on the grouper_audit_entry table. In fact, this table has grown to about 40 GB, and is apparently the biggest source of our problem. I understand that this is simply a transaction
log table, and that nothing else depends on it. Truncation means that the table would essentially be dropped and then re-created, minus all the data. That would be done in SQL. Is there any reason not to do this? If so, is there a better way to reduce
its size?
Thanks,
Rory
-----Original Message-----
From: Hyzer, Chris [mailto:]
Sent: Monday, January 29, 2018 1:03 PM
To: Shilen Patel <>; Rory Larson <>
Cc:
Subject: RE: [grouper-users] Maintaining Grouper database size
Im worried about the future state of using direct SQL, maybe something else in future will be needed that we put in the GSH command... you should definitely use that.
Thanks
Chris
-----Original Message-----
From: [mailto:] On Behalf Of Shilen Patel
Sent: Monday, January 29, 2018 1:34 PM
To: Rory Larson <>
Cc:
Subject: Re: [grouper-users] Maintaining Grouper database size
If you’re going to trim the audit based on time, I’d suggest using the gsh command since it’ll delete the records from the tables in the right order (taking into account foreign keys). But as long as you delete them in the right order via sql directly,
that should be fine as well. Also, recently, I documented how much space was being taken up at Duke (we use Oracle).
https://urldefense.proofpoint.com/v2/url?u=https-3A__spaces.internet2.edu_display_Grouper_Duke-2BDisk-2BSpace-2BUsage&d=DwIGaQ&c=Cu5g146wZdoqVuKpTNsYHVKLgTZS09MUACeOXHWmTvE&r=8UxP4WgXNK7VFhDT-iCutw&m=i5pbjVCyOSrgzJa3qHir_ok5n_Zw8MCNGbVSHFXVgZs&s=1qaggpDGSz3DUP03rlkM40RUuYd4lBXJ6ylGMs76vQQ&e=
I was surprised to see so much of the space being used by indexes. We could possibly look at reducing the number of indexes to help.
- Shilen
On 1/29/18, 9:13 AM, " on behalf of Rory Larson" < on behalf of
> wrote:
Hello,
We are encountering an issue of our Grouper database growing to a size that threatens to use up the entire hard drive space available. The database server is a physical machine with no room to expand, running a MySQL-type database (5.5.56-MariaDB MariaDB
Server).
The problem is not so much the size of the group data itself, but with point-in-time tables that record what that data was back to the beginning of the Grouper installation. Some of these have grown to huge sizes, on the order of 20 GB or so. A suggestion
has been made that we could delete a lot of this prior to some reasonable point in time, especially groups or memberships that no longer exist. This would be fine, but I'm wondering if this can be done from the database command line on a per-table basis,
or whether there are dependencies that require doing this through gsh function calls?
Also, because this is a MySQL-type database, shrinking the database physical size after deletion of unnecessary data is not trivial. OPTIMIZE TABLE ... might work, or it might make a table bigger. ALTER TABLE ... ROW FORMAT=COMPRESSED is promising
as tried on our test database, but takes about four times as long as OPTIMIZE TABLE. In either case, updating has to be shut down while running them, and they may require duplicating the table during the operation. We are at 90% now, and can't afford any
more big tables. The ultimate MySQL solution seems to be to dump the database, delete the whole thing, and reload it, which would mean complete downtime for Grouper.
Does anyone else using a MySQL-type database have a system for handling this problem and maintaining a reasonable database size?
Thanks,
Rory
--
Gail H Lift
MCommunity, IAM-IIA, ITS, University of Michigan
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