Grouper Users - Open Discussion List

[Francoise GUERIN <>]

hello,

yesterday I patched my grouper (api,ui,ws).
Now the application is not available...
One error occurs about hibernate, see below the tomcat logs.
So far, the grouper.hibernate.base parameters have not been modified. I 
read in
grouper-users list that some parameters need to be improved...
What could be done to resolve that issue?
Thank you for your help.

===
grouper.hibernate.properties: 
/grouper/installGrouper/grouper.ui-2.3.0/dist/grouper/WEB-INF/classes/grouper.hibernate.properties
grouper.hibernate.properties: 
groupero@jdbc:postgresql://localhost:5432/grouperidealdb
subject.properties read from: 
/grouper/installGrouper/grouper.ui-2.3.0/dist/grouper/WEB-INF/classes/subject.properties
sources.xml read from: 
/grouper/installGrouper/grouper.ui-2.3.0/dist/grouper/WEB-INF/classes/sources.xml
sources configured in:        sources.xml
sources.xml        groupersource id: g:gsa
sources.xml        ldap source id:   idealldap: 
uid=xxx,ou=xxxxx@ldap://xxxxxxxxxxxxxxxx.fr:389
sources.xml        groupersource id: grouperEntities
sources.xml        jdbc source id:   jdbc: GrouperJdbcConnectionProvider
Grouper error: grouper versions do not match, GrouperVersion.class: 
2.3.0, grouper.version.properties: 2.3.0, manifest: null
Grouper warning: cannot find group from config: wheel group from 
grouper.properties key: groups.wheel.group: etc:sysadmingroup
Couldnt startup grouper: Problem in HibernateSession: HibernateSession 
(6058b248): new, notReadonly, READ_WRITE_NEW, notActiveTransaction, 
session (7c5f3201)
java.lang.NullPointerException: Problem in HibernateSession: 
HibernateSession (6058b248): new, notReadonly, READ_WRITE_NEW, 
notActiveTransaction, session (7c5f3201)
        at 
edu.internet2.middleware.grouper.privs.WheelAttrDefResolver$1.callback(WheelAttrDefResolver.java:415)
        at 
edu.internet2.middleware.grouper.GrouperSession.callbackGrouperSession(GrouperSession.java:974)
        at 
edu.internet2.middleware.grouper.privs.WheelAttrDefResolver.isWheelMember(WheelAttrDefResolver.java:410)
        at 
edu.internet2.middleware.grouper.privs.WheelAttrDefResolver.isAndUseWheel(WheelAttrDefResolver.java:305)
        at 
edu.internet2.middleware.grouper.privs.WheelAttrDefResolver.hasPrivilege(WheelAttrDefResolver.java:321)
        at 
edu.internet2.middleware.grouper.privs.ValidatingAttrDefResolver.hasPrivilege(ValidatingAttrDefResolver.java:127)
        at 
edu.internet2.middleware.grouper.privs.PrivilegeHelper.canAttrView(PrivilegeHelper.java:233)
        at 
edu.internet2.middleware.grouper.internal.dao.hib3.Hib3AttributeDefDAO.filterSecurity(Hib3AttributeDefDAO.java:161)
        at 
edu.internet2.middleware.grouper.internal.dao.hib3.Hib3AttributeDefDAO.findByNameSecure(Hib3AttributeDefDAO.java:202)
        at 
edu.internet2.middleware.grouper.attr.AttributeDefSave$1$1.callback(AttributeDefSave.java:542)
        at 
edu.internet2.middleware.grouper.GrouperSession.callbackGrouperSession(GrouperSession.java:974)
        at 
edu.internet2.middleware.grouper.attr.AttributeDefSave$1.callback(AttributeDefSave.java:495)
        at 
edu.internet2.middleware.grouper.internal.dao.hib3.Hib3TransactionDAO$1.callback(Hib3TransactionDAO.java:66)
        at 
edu.internet2.middleware.grouper.hibernate.HibernateSession.callbackHibernateSession(HibernateSession.java:700)
        at 
edu.internet2.middleware.grouper.internal.dao.hib3.Hib3TransactionDAO.transactionCallback(Hib3TransactionDAO.java:56)
        at 
edu.internet2.middleware.grouper.hibernate.GrouperTransaction.callbackGrouperTransaction(GrouperTransaction.java:87)
        at 
edu.internet2.middleware.grouper.hibernate.GrouperTransaction.callbackGrouperTransaction(GrouperTransaction.java:106)
        at 
edu.internet2.middleware.grouper.attr.AttributeDefSave.save(AttributeDefSave.java:488)
        at 
edu.internet2.middleware.grouper.misc.GrouperCheckConfig.checkAttributes(GrouperCheckConfig.java:1757)
        at 
edu.internet2.middleware.grouper.misc.GrouperCheckConfig.checkConfig(GrouperCheckConfig.java:463)
        at 
edu.internet2.middleware.grouper.misc.GrouperStartup.startup(GrouperStartup.java:256)
        at 
edu.internet2.middleware.grouper.ui.GrouperUiFilter.init(GrouperUiFilter.java:829)
        at 
org.apache.catalina.core.ApplicationFilterConfig.getFilter(ApplicationFilterConfig.java:295)
        at 
org.apache.catalina.core.ApplicationFilterConfig.setFilterDef(ApplicationFilterConfig.java:422)
        at 
org.apache.catalina.core.ApplicationFilterConfig.<init>(ApplicationFilterConfig.java:115)
        at 
org.apache.catalina.core.StandardContext.filterStart(StandardContext.java:4072)
        at 
org.apache.catalina.core.StandardContext.start(StandardContext.java:4726)
        at 
org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1057)
        at 
org.apache.catalina.core.StandardHost.start(StandardHost.java:840)
        at 
org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1057)
        at 
org.apache.catalina.core.StandardEngine.start(StandardEngine.java:463)
        at 
org.apache.catalina.core.StandardService.start(StandardService.java:525)
        at 
org.apache.catalina.core.StandardServer.start(StandardServer.java:754)
        at org.apache.catalina.startup.Catalina.start(Catalina.java:595)
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at 
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
        at 
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
        at java.lang.reflect.Method.invoke(Method.java:606)
        at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:289)
        at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:414)
f▒vr. 08, 2017 6:07:44 PM org.apache.catalina.core.StandardContext start
GRAVE: Error filterStart
f▒vr. 08, 2017 6:07:44 PM org.apache.catalina.core.StandardContext start
GRAVE: Erreur de d▒marrage du contexte [/grouperideal] suite aux erreurs 
pr▒c▒dentes
f▒vr. 08, 2017 6:07:44 PM org.apache.catalina.loader.WebappClassLoader 
clearReferencesThreads
GRAVE: The web application [/grouperideal] appears to have started a 
thread named [Timer-3] but has failed to stop it. This is very likely to 
create a memory leak.
f▒vr. 08, 2017 6:07:44 PM org.apache.catalina.loader.WebappClassLoader 
clearReferencesThreads
GRAVE: The web application [/grouperideal] appears to have started a 
thread named [Thread-7] but has failed to stop it. This is very likely 
to create a memory leak.
f▒vr. 08, 2017 6:07:44 PM org.apache.catalina.loader.WebappClassLoader 
clearReferencesThreads
GRAVE: The web application [/grouperideal] appears to have started a 
thread named [Thread-8] but has failed to stop it. This is very likely 
to create a memory leak.
f▒vr. 08, 2017 6:07:44 PM org.apache.catalina.loader.WebappClassLoader 
clearReferencesThreads
GRAVE: The web application [/grouperideal] appears to have started a 
thread named [Thread-9] but has failed to stop it. This is very likely 
to create a memory leak.
f▒vr. 08, 2017 6:07:44 PM org.apache.catalina.loader.WebappClassLoader 
clearReferencesThreads
GRAVE: The web application [/grouperideal] appears to have started a 
thread named 
[C3P0PooledConnectionPoolManager[identityToken->1br7poa9m8ilkri1fkeoc0|4f1e9e2d]-AdminTaskTimer] 
but has failed to stop it. T
his is very likely to create a memory leak.
f▒vr. 08, 2017 6:07:44 PM org.apache.catalina.loader.WebappClassLoader 
clearReferencesThreads
GRAVE: The web application [/grouperideal] appears to have started a 
thread named 
[C3P0PooledConnectionPoolManager[identityToken->1br7poa9m8ilkri1fkeoc0|4f1e9e2d]-HelperThread-#0] 
but has failed to stop it.
This is very likely to create a memory leak.
f▒vr. 08, 2017 6:07:44 PM org.apache.catalina.loader.WebappClassLoader 
clearReferencesThreads
GRAVE: The web application [/grouperideal] appears to have started a 
thread named 
[C3P0PooledConnectionPoolManager[identityToken->1br7poa9m8ilkri1fkeoc0|4f1e9e2d]-HelperThread-#1] 
but has failed to stop it.
This is very likely to create a memory leak.
f▒vr. 08, 2017 6:07:44 PM org.apache.catalina.loader.WebappClassLoader 
clearReferencesThreads
GRAVE: The web application [/grouperideal] appears to have started a 
thread named 
[C3P0PooledConnectionPoolManager[identityToken->1br7poa9m8ilkri1fkeoc0|4f1e9e2d]-HelperThread-#2] 
but has failed to stop it.
This is very likely to create a memory leak.
f▒vr. 08, 2017 6:07:44 PM org.apache.catalina.loader.WebappClassLoader 
clearReferencesThreads
GRAVE: The web application [/grouperideal] appears to have started a 
thread named [net.sf.ehcache.CacheManager@633c4226] but has failed to 
stop it. This is very likely to create a memory leak.
f▒vr. 08, 2017 6:07:45 PM org.apache.catalina.startup.HostConfig 
deployDescriptor

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FG