Grouper Users - Open Discussion List

["Hagimoto, Kumi" <>]

Hi Chris,

Thanks for the steps to check the patch status.  After not getting the same results as you, I realized that I inadvertently undid the patches.  I’ll re-apply them.. I’m sure it’ll work fine then..  Sorry for the troubles!

Thanks,

Kumi

On Jan 21, 2017, at 2:24 PM, Hyzer, Chris <> wrote:

That’s weird.  I can delete a folder in the fully patched demo server.  Can you reproduce it by creating an empty folder and deleting it?  What happens when you do something like this:  (it will make sure you are patched)

 

[mchyzer@i2midev1 hibernate]$ pwd

/opt/tomcats/tomcat_f/webapps/grouper_v2_3/WEB-INF/classes/edu/internet2/middleware/grouper/hibernate

 

[mchyzer@i2midev1 hibernate]$ ls

ByHql.class  ByHqlStatic$1.class  ByHqlStatic$3.class  ByHqlStatic.java      GrouperContext.java  HibUtils.java

ByHql.java   ByHqlStatic$2.class  ByHqlStatic.class    GrouperContext.class  HibUtils.class

 

[mchyzer@i2midev1 hibernate]$ grep executeUpdate ByHql.java | grep void

  public void executeUpdate() throws GrouperDAOException {

[mchyzer@i2midev1 hibernate]$

 

 

 

 

Where is the grouper API installed? [appadmin@i2midev1 patchesAuto]$ java -jar grouperInstaller.jar

Do you want to 'install' a new installation of grouper, 'upgrade' an existing installation,

  'patch' an existing installation, 'admin' utilities, or 'createPatch' for Grouper developers

  (enter: 'install', 'upgrade', 'patch', 'admin', 'createPatch' or blank for the default) [install]: patch

Enter in a Grouper temp directory to download tarballs (note: better if no spaces or special chars) [/opt/grouper/2.3/patchesAuto/tarballs]:

What do you want to patch?  api, ui, ws, pspng, or psp? [API]: ui

Where is the grouper UI installed? /opt/tomcats/tomcat_f/webapps/grouper_v2_3

What do you want to do with patches (install, revert, status, fixIndexFile)? [install]: status

Do you want to fix the patch index file (download all patches and see if they are installed?) (not recommended) (t|f)? [f]:

 

Patch: grouper_v2_3_0_api_patch_39: was applied on: 2016/12/30 23:54:24

 

Patch: grouper_v2_3_0_api_patch_42: was applied on: 2017/01/17 07:19:08

 

-----Original Message-----
From: [] On Behalf Of Kumi Hagimoto
Sent: Friday, January 20, 2017 4:49 PM
To:
Subject: [grouper-users] Can't delete folder

 

Hi,

 

We're getting the following error when trying to delete a folder.  (At the end

of this post.)

Running v 2.3.0 with the latest patch as of yesterday.   The error is very

similar to the one reported here:

https://lists.internet2.edu/sympa/arc/grouper-users/2017-01/msg00051.html

 

Thanks,

Kumi

 

 

2017-01-20 13:22:16,994  WARN serviceLogic.UiV2Stem:  Error deleting stem:

'morgan'/'person'/'ldap', Stem[displayName=osu:ref:employ

ee:uhds,name=osu:ref:emp:uhds,uuid=197f128ca5e843628b31543ff1b76ffa,creator=da

5a7162a43444878d8b95d965d11f53]

edu.internet2.middleware.grouper.exception.StemDeleteException: Problem in

HibernateSession: HibernateSession (69709eba): notNew, no

tReadonly, READ_WRITE_NEW, activeTransaction, session (60c4fb6a),

osu:ref:emp:uhds,

Problem in HibernateSession: HibernateSession (18894936): new, notReadonly,

READ_WRITE_NEW, notActiveTransaction, session (60c4fb6a)

        at edu.internet2.middleware.grouper.Stem$1.callback(Stem.java:707)

        at

edu.internet2.middleware.grouper.hibernate.HibernateSession.callbackHibernateS

ession(HibernateSession.java:700)

        at edu.internet2.middleware.grouper.Stem.delete(Stem.java:662)

        at

edu.internet2.middleware.grouper.grouperUi.serviceLogic.UiV2Stem.stemDeleteSub

mit(UiV2Stem.java:1642)

        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)

        at

sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)

        at

sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.j

ava:43)

        at java.lang.reflect.Method.invoke(Method.java:606)

        at

edu.internet2.middleware.grouper.util.GrouperUtil.invokeMethod(GrouperUtil.jav

a:4112)

        at

edu.internet2.middleware.grouper.util.GrouperUtil.callMethod(GrouperUtil.java:

4063)

        at

edu.internet2.middleware.grouper.j2ee.GrouperUiRestServlet.doGet(GrouperUiRest

Servlet.java:291)

        at

edu.internet2.middleware.grouper.j2ee.GrouperUiRestServlet.doPost(GrouperUiRes

tServlet.java:163)

        at javax.servlet.http.HttpServlet.service(HttpServlet.java:643)

        at javax.servlet.http.HttpServlet.service(HttpServlet.java:723)

        at

org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFi

lterChain.java:290)

        at

org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChai

n.java:206)

        at

org.owasp.csrfguard.CsrfGuardFilter.doFilter(CsrfGuardFilter.java:110)

        at

org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFi

lterChain.java:235)

        at

org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChai

n.java:206)

        at

edu.internet2.middleware.grouper.ui.GrouperUiFilter.doFilter(GrouperUiFilter.j

ava:1023)

        at

org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFi

lterChain.java:235)

        at

org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChai

n.java:206)

        at

edu.yale.its.tp.cas.client.filter.CASFilter.doFilter(CASFilter.java:209)

        at

org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFi

lterChain.java:235)

        at

org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChai

n.java:206)

        at

uk.ac.bris.is.grouper.ui.PreCASFilter.doFilter(PreCASFilter.java:128)

        at

org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFi

lterChain.java:235)

        at

org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChai

n.java:206)

        at

org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java

:233)

        at

org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java

:191)

        at

org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.j

ava:563)

        at

org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127)

        at

org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:103)

        at

org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:1

09)

        at

org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:293)

        at

org.apache.jk.server.JkCoyoteHandler.invoke(JkCoyoteHandler.java:223)

        at org.apache.jk.common.HandlerRequest.invoke(HandlerRequest.java:311)

        at org.apache.jk.common.ChannelSocket.invoke(ChannelSocket.java:793)

        at

org.apache.jk.common.ChannelSocket.processConnection(ChannelSocket.java:722)

        at

org.apache.jk.common.ChannelSocket$SocketConnection.runIt(ChannelSocket.java:9

15)

        at

org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPool.java:

690)

        at java.lang.Thread.run(Thread.java:745)

Caused by: edu.internet2.middleware.grouper.internal.dao.GrouperDAOException:

Problem in HibernateSession: HibernateSession (69709eba): notNew, notReadonly,

READ_WRITE_NEW, activeTransaction, session (60c4fb6a)

        at

edu.internet2.middleware.grouper.hibernate.HibernateSession._internal_hibernat

eSessionCatch(HibernateSession.java:604)

        at

edu.internet2.middleware.grouper.hibernate.HibernateSession.callbackHibernateS

ession(HibernateSession.java:710)

        at

edu.internet2.middleware.grouper.internal.dao.hib3.Hib3GroupSetDAO.deleteSelfB

yOwnerStem(Hib3GroupSetDAO.java:172)

        at

edu.internet2.middleware.grouper.internal.dao.hib3.Hib3StemDAO.delete(Hib3Stem

DAO.java:448)

        at edu.internet2.middleware.grouper.Stem$1.callback(Stem.java:693)

        ... 41 more

Caused by: java.lang.NoSuchMethodError:

edu.internet2.middleware.grouper.hibernate.ByHql.executeUpdate()V

        at

edu.internet2.middleware.grouper.internal.dao.hib3.Hib3GroupSetDAO$3.callback(

Hib3GroupSetDAO.java:179)

        at

edu.internet2.middleware.grouper.hibernate.HibernateSession.callbackHibernateS

ession(HibernateSession.java:700)

        ... 44 more