Grouper Users - Open Discussion List

[Shilen Patel <>]

Hi Colin,

For the second issue, can you send me the complete stack trace?

Thanks!

-- Shilen

On 12/3/10 2:44 PM, Colin Hudler wrote:
> Greetings,
>
> Today I am troubleshooting a multi-symptom problem with grouper 1.6.2
> running on oracle 11g.  I know of nothing that happened or changed in
> the last two days to cause this (we've been running smoothly until now).
>    Sorry for vomiting these stack traces here; I hope it helps someone to
> see the direction of the problem.  I also hope that the problems are
> related, because they all showed up around the same time.  When browsing
> to a particular group-of-groups in the UI this error is logged:
>
> 2010-12-03 13:21:17,695: [TP-Processor23] ERROR
> GrouperCapableAction.execute(?) -<  chudler
> 485E91D737D48700834238215E9B8B65-0110 840a2034d00a41608b9ec2436cd5c142
> 21882177X ucmcdb>  - java.lang.RuntimeException: Too many results: 42672
>           at
> edu.internet2.middleware.grouper.internal.dao.hib3.Hib3MembershipDAO.findAllByGroupOwnerOptions(Hib3MembershipDAO.java:630)
>           at
> edu.internet2.middleware.grouper.MembershipFinder.findMemberships(MembershipFinder.java:81)
>           at
> edu.internet2.middleware.grouper.ui.actions.PopulateGroupMembersAction.grouperExecute(Unknown
> Source)
>           at
> edu.internet2.middleware.grouper.ui.actions.GrouperCapableAction$1.callback(Unknown
> Source)
>           at
> <snip>
> org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPool.java:685)
>           at java.lang.Thread.run(Thread.java:619)
>
> The web interface simply shows the generic error page.  Additionally,
> our daily report from grouper-loader generates a different stack trace
> (an oracle error!) while it is syncing flat memberships table:
>
> edu.internet2.middleware.grouper.misc.GrouperReportException: Problem
> generating daily report
>         at
> edu.internet2.middleware.grouper.misc.GrouperReport.runReport(GrouperReport.java:400)
>         at
> edu.internet2.middleware.grouper.app.loader.GrouperLoaderType$2.runJob(GrouperLoaderType.java:215)
>         at
> edu.internet2.middleware.grouper.app.loader.GrouperLoaderJob.runJob(GrouperLoaderJob.java:344)
>         at
> edu.internet2.middleware.grouper.app.loader.GrouperLoaderJob.execute(GrouperLoaderJob.java:247)
>         at org.quartz.core.JobRunShell.run(JobRunShell.java:202)
>         at
> org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:529)
> Caused by:
> edu.internet2.middleware.grouper.internal.dao.GrouperDAOException:
> Problem in HibernateSession: HibernateSession: isNew: true, isReadonly:
> true, grouperTransactionType: READONLY_NEW,
> Exception in list: (class edu.internet2.middleware.grouper.Membership),
> ByHqlStatic, query: 'select ms from MembershipEntry ms where
> ms.enabledDb='T' and not exists (select 1 from FlatMembership flatMship
>       where flatMship.ownerId=ms.ownerId     and
> flatMship.memberId=ms.memberUuid and flatMship.fieldId=ms.fieldId) and
> not exists (select 1 from ChangeLogEntryTemp temp, ChangeLogType type
>     where temp.string06 = ms.ownerGroupId and temp.string09=ms.fieldId
>     and type.actionName='addMembership' and
> type.changeLogCategory='membership' and type.id=temp.changeLogTypeId)
> and not exists (select 1 from ChangeLogEntryTemp temp, ChangeLogType
> type     where temp.string07 = ms.ownerId and temp.string10=ms.fieldId
>      and type.actionName='addPrivilege' and
> type.changeLogCategory='privilege' and type.id=temp.changeLogTypeId) and
> not exists (select 1 from ChangeLogEntryTemp temp, ChangeLogType type,
> Member m, MembershipEntry ms2     where temp.string09=:fieldId and
> type.actionName='addMembership' and type.changeLogCategory='membership'
> and type.id=temp.changeLogTypeId     and m.subjectIdDb=temp.string06 and
> m.subjectSourceIdDb='g:gsa'     and ms2.memberUuid = m.uuid     and
> ms.ownerId=ms2.ownerId     and ms.fieldId = ms2.fieldId and
> ms2.enabledDb='T') order by ms.immediateMembershipId, ms.groupSetId',
> cacheable: false, cacheRegion:
> edu.internet2.middleware.grouper.internal.dao.hib3.Hib3FlatMembershipDAO.FindMissingFlatMemberships,
> tx type: null, options: QueryOptions: queryPaging: pageSize: 100000,
> pageNumberOnIndexed: 1, , tx type: nullBind var[0]: 'Param (class
> java.lang.String): 'fieldId'->'8007cdc65bc24e928c13ab7a9ea3fae2',
>         at
> edu.internet2.middleware.grouper.hibernate.HibernateSession._internal_hibernateSessionCatch(HibernateSession.java:424)
>         at
> edu.internet2.middleware.grouper.hibernate.HibernateSession.callbackHibernateSession(HibernateSession.java:510)
>         at
> edu.internet2.middleware.grouper.hibernate.ByHqlStatic.list(ByHqlStatic.java:346)
>         at
> edu.internet2.middleware.grouper.hibernate.ByHqlStatic.listSet(ByHqlStatic.java:395)
>         at
> edu.internet2.middleware.grouper.internal.dao.hib3.Hib3FlatMembershipDAO.findMissingFlatMemberships(Hib3FlatMembershipDAO.java:288)
>         at
> edu.internet2.middleware.grouper.misc.SyncFlatTables.addMissingFlatMemberships(SyncFlatTables.java:341)
>         at
> edu.internet2.middleware.grouper.misc.SyncFlatTables.syncAllFlatTables(SyncFlatTables.java:158)
>         at
> edu.internet2.middleware.grouper.misc.GrouperReport.runReport(GrouperReport.java:195)
>         ... 5 more
> Caused by: org.hibernate.exception.SQLGrammarException: could not
> update:
> [MembershipEntry#component[uuid,immediateMembershipId,groupSetId]{groupSetId=55d3a30ada5040febdd7ac5ddc504ae5,
> immediateMembershipId=00554d01d4eb451e93305b898f81adf3,
> uuid=00554d01d4eb451e93305b898f81adf3:55d3a30ada5040febdd7ac5ddc504ae5}]
>         at
> org.hibernate.exception.SQLStateConverter.convert(SQLStateConverter.java:67)
>         at
> org.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:43)
>         at
> org.hibernate.persister.entity.AbstractEntityPersister.update(AbstractEntityPersister.java:2430)
>         at
> org.hibernate.persister.entity.AbstractEntityPersister.updateOrInsert(AbstractEntityPersister.java:2312)
>         at
> org.hibernate.persister.entity.AbstractEntityPersister.update(AbstractEntityPersister.java:2612)
>         at
> org.hibernate.action.EntityUpdateAction.execute(EntityUpdateAction.java:96)
> <snip>
> edu.internet2.middleware.grouper.hibernate.HibernateSession.callbackHibernateSession(HibernateSession.java:500)
>         ... 11 more
> Caused by: java.sql.SQLException: ORA-01779: cannot modify a column
> which maps to a non key-preserved table
>
>         at oracle.jdbc.driver.T4CTTIoer.processError(T4CTTIoer.java:439)
>
>
> I can easily duplicate this with gsh: "new
> SyncFlatTables().sendNotifications(false).syncAllFlatTables();", but
> debugging logs haven't revealed much of use.  Finally, "gsh
> -findbadmemberships -all" fails with:
>
> org/hibernate/engine/TwoPhaseLoad.java:104:in `initializeEntity':
> org.hibernate.AssertionFailure: possible non-threadsafe access to the
> session, (NativeException)
> Problem in HibernateSession: HibernateSession: isNew: false, isReadonly:
> false, grouperTransactionType: READ_WRITE_NEW,
> Exception in list: (class [Ljava.lang.Object;), ByHqlStatic, query:
> 'select distinct ms, m from MembershipEntry as ms, Member as m, Field as
> field where       ms.ownerGroupId   = :owner            and
> ms.memberUuid  = :member           and  ms.fieldId = :fuuid and
> ms.memberUuid  = m.uuid     and ms.enabledDb = 'T'', cacheable: false,
> cacheRegion:
> edu.internet2.middleware.grouper.internal.dao.hib3.Hib3MembershipDAO.FindAllByGroupOwnerAndMemberAndField,
> tx type: null, tx type: nullBind var[0]: 'Param (class
> java.lang.String): 'owner'->'7a246c38-b60e-4b11-96e6-67683fe82237', Bind
> var[1]: 'Param (class java.lang.String):
> 'member'->'89fc30292ed14ea091d5e792c24038e8'Bind var[2]: 'Param (class
> java.lang.String): 'fuuid'->'8007cdc65bc24e928c13ab7a9ea3fae2', ,
> Exception in delete: edu.internet2.middleware.grouper.Membership,
> edu.internet2.middleware.grouper.hibernate.ByObject@6f65bb15,
> Problem in HibernateSession: HibernateSession: isNew: false, isReadonly:
> false, grouperTransactionType: READ_WRITE_NEW,
> Exception in delete: edu.internet2.middleware.grouper.Membership,
> ByObjectStatic, query: ', cacheable: null, cacheRegion: null,
> entityName: ImmediateMembershipEntry, tx type: null,
> Problem in HibernateSession: HibernateSession: isNew: false, isReadonly:
> false, grouperTransactionType: READ_WRITE_NEW,
> Problem in HibernateSession: HibernateSession: isNew: true, isReadonly:
> false, grouperTransactionType: READ_WRITE_NEW
>         from org/hibernate/loader/Loader.java:854:in
> `initializeEntitiesAndCollections'
>         from org/hibernate/loader/Loader.java:729:in `doQuery'
>         from org/hibernate/loader/Loader.java:236:in
> `doQueryAndInitializeNonLazyCollections'
>         from org/hibernate/loader/Loader.java:2213:in `doList'
>         from org/hibernate/loader/Loader.java:2104:in `listIgnoreQueryCache'
>         from org/hibernate/loader/Loader.java:2099:in `list'
>         from org/hibernate/loader/hql/QueryLoader.java:378:in `list'
>         from org/hibernate/hql/ast/QueryTranslatorImpl.java:338:in `list'
>          ... 35 levels...
>         from run.rb:50
>         from run.rb:40:in `each'
>         from run.rb:40
>
> Several of our own loader jobs and scripts (using the API) generate the
> same error.
>