Grouper Developers Forum

["Hyzer, Chris" <>]

Can you please try this again and let us know if you still have problems?

Thanks

Chris

---

From: <> on behalf of <>
Sent: Wednesday, January 11, 2017 8:02:56 PM
To:
Subject: [grouper-dev] Grouper fresh install not working

 

Hi devs, hope all of you are well.

I did a fresh install of grouper on my local machine (windows 10) with no
problems, but now I'm trying it on a linux machine with no good results, the
installer goes all ok (using the included database an all) until it tries to
install the web service client, it shows this error:

Do you want to install the web services client (t|f)? [t]:
Downloading from URL:
https://software.internet2.edu/grouper/release/2.3.0/grouper.clientBinary-2.3.
0.tar.gz to file:
/programas/grouper/tarballs/grouper.clientBinary-2.3.0.tar.gz
Unzipping: /programas/grouper/tarballs/grouper.clientBinary-2.3.0.tar.gz
Expanding: /programas/grouper/tarballs/grouper.clientBinary-2.3.0.tar to
/programas/grouper/grouper.clientBinary-2.3.0
Editing
/programas/grouper/grouper.clientBinary-2.3.0/grouper.client.properties:
 - set property: grouperClient.webService.url from:  to:
http://localhost:8080/grouper-ws/servicesRest
 - set property: grouperClient.webService.login from:  to: GrouperSystem
 - set property: grouperClient.webService.password from:  to: elGrouper.p

##################################
Adding user GrouperSystem to grouper-ws users group with command:
  /programas/grouper/grouper.apiBinary-2.3.0/bin/gsh.sh
/programas/grouper/grouper.apiBinary-2.3.0/gshAddGrouperSystemWsGroup.gsh

.
stderr: Couldnt startup grouper: Problem attributeAssignAction:
AttributeAssignAction[name=assign,id=24672098d29446eea143def8e71e31c6],
Problem in HibernateSession: HibernateSession (7523a3dc): notNew, notReadonly,
READ_WRITE_NEW, activeTransaction, session (2806d6da),
Problem in HibernateSession: HibernateSession (6e3ecf5c): new, notReadonly,
READ_WRITE_NEW, notActiveTransaction, session (2806d6da)
edu.internet2.middleware.grouper.internal.dao.GrouperDAOException: Problem
attributeAssignAction:
AttributeAssignAction[name=assign,id=24672098d29446eea143def8e71e31c6],
Problem in HibernateSession: HibernateSession (7523a3dc): notNew, notReadonly,
READ_WRITE_NEW, activeTransaction, session (2806d6da),
Problem in HibernateSession: HibernateSession (6e3ecf5c): new, notReadonly,
READ_WRITE_NEW, notActiveTransaction, session (2806d6da)
        at
edu.internet2.middleware.grouper.attr.assign.AttributeAssignAction.delete(Attr
ibuteAssignAction.java:343)
        at
edu.internet2.middleware.grouper.attr.assign.AttributeDefActionDelegate.config
ureActionList(AttributeDefActionDelegate.java:191)
        at
edu.internet2.middleware.grouper.attr.assign.AttributeDefActionDelegate.config
ureActionList(AttributeDefActionDelegate.java:59)
        at
edu.internet2.middleware.grouper.misc.GrouperCheckConfig.checkAttributes(Group
erCheckConfig.java:1848)
        at
edu.internet2.middleware.grouper.misc.GrouperCheckConfig.checkConfig(GrouperCh
eckConfig.java:463)
        at
edu.internet2.middleware.grouper.misc.GrouperStartup.startup(GrouperStartup.ja
va:256)
        at
edu.internet2.middleware.grouper.app.gsh.GrouperShell.main(GrouperShell.java:1
51)
        at
edu.internet2.middleware.grouper.app.gsh.GrouperShellWrapper.main(GrouperShell
Wrapper.java:31)
Caused by: edu.internet2.middleware.grouper.internal.dao.GrouperDAOException:
Problem in HibernateSession: HibernateSession (7523a3dc): notNew, notReadonly,
READ_WRITE_NEW, activeTransaction, session (2806d6da),
Problem in HibernateSession: HibernateSession (6e3ecf5c): new, notReadonly,
READ_WRITE_NEW, notActiveTransaction, session (2806d6da)
        at
edu.internet2.middleware.grouper.hibernate.HibernateSession._internal_hibernat
eSessionCatch(HibernateSession.java:604)
        at
edu.internet2.middleware.grouper.hibernate.HibernateSession.callbackHibernateS
ession(HibernateSession.java:710)
        at
edu.internet2.middleware.grouper.internal.dao.hib3.Hib3AttributeAssignActionSe
tDAO.delete(Hib3AttributeAssignActionSetDAO.java:127)
        at
edu.internet2.middleware.grouper.attr.assign.AttributeAssignActionSet.delete(A
ttributeAssignActionSet.java:510)
        at
edu.internet2.middleware.grouper.attr.assign.AttributeAssignAction$1.callback(
AttributeAssignAction.java:322)
        at
edu.internet2.middleware.grouper.hibernate.HibernateSession.callbackHibernateS
ession(HibernateSession.java:700)
        at
edu.internet2.middleware.grouper.attr.assign.AttributeAssignAction.delete(Attr
ibuteAssignAction.java:272)
        ... 7 more
Caused by: java.lang.NoSuchMethodError:
edu.internet2.middleware.grouper.hibernate.ByHql.executeUpdate()V
        at
edu.internet2.middleware.grouper.internal.dao.hib3.Hib3AttributeAssignActionSe
tDAO$1.callback(Hib3AttributeAssignActionSetDAO.java:138)
        at
edu.internet2.middleware.grouper.hibernate.HibernateSession.callbackHibernateS
ession(HibernateSession.java:700)
        ... 12 more
Exception in thread "main"
edu.internet2.middleware.grouper.internal.dao.GrouperDAOException: Problem
attributeAssignAction:
AttributeAssignAction[name=assign,id=24672098d29446eea143def8e71e31c6],
Problem in HibernateSession: HibernateSession (7523a3dc): notNew, notReadonly,
READ_WRITE_NEW, activeTransaction, session (2806d6da),
Problem in HibernateSession: HibernateSession (6e3ecf5c): new, notReadonly,
READ_WRITE_NEW, notActiveTransaction, session (2806d6da)
        at
edu.internet2.middleware.grouper.attr.assign.AttributeAssignAction.delete(Attr
ibuteAssignAction.java:343)
        at
edu.internet2.middleware.grouper.attr.assign.AttributeDefActionDelegate.config
ureActionList(AttributeDefActionDelegate.java:191)
        at
edu.internet2.middleware.grouper.attr.assign.AttributeDefActionDelegate.config
ureActionList(AttributeDefActionDelegate.java:59)
        at
edu.internet2.middleware.grouper.misc.GrouperCheckConfig.checkAttributes(Group
erCheckConfig.java:1848)
        at
edu.internet2.middleware.grouper.misc.GrouperCheckConfig.checkConfig(GrouperCh
eckConfig.java:463)
        at
edu.internet2.middleware.grouper.misc.GrouperStartup.startup(GrouperStartup.ja
va:256)
        at
edu.internet2.middleware.grouper.app.gsh.GrouperShell.main(GrouperShell.java:1
51)
        at
edu.internet2.middleware.grouper.app.gsh.GrouperShellWrapper.main(GrouperShell
Wrapper.java:31)
Caused by: edu.internet2.middleware.grouper.internal.dao.GrouperDAOException:
Problem in HibernateSession: HibernateSession (7523a3dc): notNew, notReadonly,
READ_WRITE_NEW, activeTransaction, session (2806d6da),
Problem in HibernateSession: HibernateSession (6e3ecf5c): new, notReadonly,
READ_WRITE_NEW, notActiveTransaction, session (2806d6da)
        at
edu.internet2.middleware.grouper.hibernate.HibernateSession._internal_hibernat
eSessionCatch(HibernateSession.java:604)
        at
edu.internet2.middleware.grouper.hibernate.HibernateSession.callbackHibernateS
ession(HibernateSession.java:710)
        at
edu.internet2.middleware.grouper.internal.dao.hib3.Hib3AttributeAssignActionSe
tDAO.delete(Hib3AttributeAssignActionSetDAO.java:127)
        at
edu.internet2.middleware.grouper.attr.assign.AttributeAssignActionSet.delete(A
ttributeAssignActionSet.java:510)
        at
edu.internet2.middleware.grouper.attr.assign.AttributeAssignAction$1.callback(
AttributeAssignAction.java:322)
        at
edu.internet2.middleware.grouper.hibernate.HibernateSession.callbackHibernateS
ession(HibernateSession.java:700)
        at
edu.internet2.middleware.grouper.attr.assign.AttributeAssignAction.delete(Attr
ibuteAssignAction.java:272)
        ... 7 more
Caused by: java.lang.NoSuchMethodError:
edu.internet2.middleware.grouper.hibernate.ByHql.executeUpdate()V
        at
edu.internet2.middleware.grouper.internal.dao.hib3.Hib3AttributeAssignActionSe
tDAO$1.callback(Hib3AttributeAssignActionSetDAO.java:138)
        at
edu.internet2.middleware.grouper.hibernate.HibernateSession.callbackHibernateS
ession(HibernateSession.java:700)
        ... 12 more

stdout: Using GROUPER_HOME: /programas/grouper/grouper.apiBinary-2.3.0
Using GROUPER_CONF: /programas/grouper/grouper.apiBinary-2.3.0/conf
Using JAVA: /programas/java/jdk1.8.0_111/bin/java
using MEMORY: 64m-750m
Grouper starting up: version: 2.3.0, build date: 2016/04/16 05:37:21, env: <no
label configured>
grouper.properties read from:
/programas/grouper/grouper.apiBinary-2.3.0/conf/grouper.properties
Grouper current directory is: /programas/grouper/grouper.apiBinary-2.3.0
log4j.properties read from: 
/programas/grouper/grouper.apiBinary-2.3.0/conf/log4j.properties
Grouper is logging to file: 
/programas/grouper/grouper.apiBinary-2.3.0/logs/grouper_error.log, at min
level WARN for package: edu.internet2.middleware.grouper, based on
log4j.properties
grouper.hibernate.properties:
/programas/grouper/grouper.apiBinary-2.3.0/conf/grouper.hibernate.properties
grouper.hibernate.properties: sa@jdbc:hsqldb:hsql://localhost:9001/grouper
subject.properties read from:
/programas/grouper/grouper.apiBinary-2.3.0/conf/subject.properties
sources.xml read from:      
/programas/grouper/grouper.apiBinary-2.3.0/conf/sources.xml
sources configured in:        sources.xml
sources.xml        groupersource id: g:gsa
sources.xml        groupersource id: grouperEntities
sources.xml        jdbc source id:   jdbc: GrouperJdbcConnectionProvider

##################################
Running client command:
/programas/grouper/grouper.clientBinary-2.3.0>
/programas/java/jdk1.8.0_111/bin/java -jar grouperClient.jar
--operation=getMembersWs --groupNames=etc:webServiceClientUsers
^[^[[D.Jan 11, 2017 9:58:15 PM
edu.internet2.middleware.grouperInstaller.util.GrouperInstallerUtils
execCommandHelper
SEVERE: Process exit status=1: out: , err: Error with grouper client, check
the logs: Web service did not even respond!
http://localhost:8080/grouper-ws/servicesRest
Jan 11, 2017 9:58:15 PM edu.internet2.middleware.grouperClient.GrouperClient
main
SEVERE: Web service did not even respond!
http://localhost:8080/grouper-ws/servicesRest
java.lang.RuntimeException: Web service did not even respond!
http://localhost:8080/grouper-ws/servicesRest
        at
edu.internet2.middleware.grouperClient.ws.GrouperClientWs.executeServiceHelper
(GrouperClientWs.java:640)
        at
edu.internet2.middleware.grouperClient.ws.GrouperClientWs.access$000(GrouperCl
ientWs.java:71)
        at
edu.internet2.middleware.grouperClient.ws.GrouperClientWs$1.logic(GrouperClien
tWs.java:567)
        at
edu.internet2.middleware.grouperClient.ws.GrouperClientWs$1.logic(GrouperClien
tWs.java:561)
        at
edu.internet2.middleware.grouperClient.failover.FailoverClient.internal_failov
erLogic(FailoverClient.java:705)
        at
edu.internet2.middleware.grouperClient.failover.FailoverClient.failoverLogic(F
ailoverClient.java:610)
        at
edu.internet2.middleware.grouperClient.failover.FailoverClient.failoverLogic(F
ailoverClient.java:586)
        at
edu.internet2.middleware.grouperClient.ws.GrouperClientWs.executeService(Group
erClientWs.java:561)
        at
edu.internet2.middleware.grouperClient.api.GcGetMembers.execute(GcGetMembers.j
ava:422)
        at
edu.internet2.middleware.grouperClient.GrouperClient.getMembers(GrouperClient.
java:2257)
        at
edu.internet2.middleware.grouperClient.GrouperClient.main(GrouperClient.java:3
65)

, on command: /programas/java/jdk1.8.0_111/bin/java -jar grouperClient.jar
--operation=getMembersWs --groupNames=etc:webServiceClientUsers , workingDir:
/programas/grouper/grouper.clientBinary-2.3.0

Exception in thread "main" java.lang.RuntimeException: Process exit status=1:
out: , err: Error with grouper client, check the logs: Web service did not
even respond! http://localhost:8080/grouper-ws/servicesRest
Jan 11, 2017 9:58:15 PM edu.internet2.middleware.grouperClient.GrouperClient
main
SEVERE: Web service did not even respond!
http://localhost:8080/grouper-ws/servicesRest
java.lang.RuntimeException: Web service did not even respond!
http://localhost:8080/grouper-ws/servicesRest
        at
edu.internet2.middleware.grouperClient.ws.GrouperClientWs.executeServiceHelper
(GrouperClientWs.java:640)
        at
edu.internet2.middleware.grouperClient.ws.GrouperClientWs.access$000(GrouperCl
ientWs.java:71)
        at
edu.internet2.middleware.grouperClient.ws.GrouperClientWs$1.logic(GrouperClien
tWs.java:567)
        at
edu.internet2.middleware.grouperClient.ws.GrouperClientWs$1.logic(GrouperClien
tWs.java:561)
        at
edu.internet2.middleware.grouperClient.failover.FailoverClient.internal_failov
erLogic(FailoverClient.java:705)
        at
edu.internet2.middleware.grouperClient.failover.FailoverClient.failoverLogic(F
ailoverClient.java:610)
        at
edu.internet2.middleware.grouperClient.failover.FailoverClient.failoverLogic(F
ailoverClient.java:586)
        at
edu.internet2.middleware.grouperClient.ws.GrouperClientWs.executeService(Group
erClientWs.java:561)
        at
edu.internet2.middleware.grouperClient.api.GcGetMembers.execute(GcGetMembers.j
ava:422)
        at
edu.internet2.middleware.grouperClient.GrouperClient.getMembers(GrouperClient.
java:2257)
        at
edu.internet2.middleware.grouperClient.GrouperClient.main(GrouperClient.java:3
65)

,
java.lang.RuntimeException: caller stack
        at
edu.internet2.middleware.grouperInstaller.util.GrouperInstallerUtils.threadRun
WithStatusDots(GrouperInstallerUtils.java:8345)
        at
edu.internet2.middleware.grouperInstaller.util.GrouperInstallerUtils.execComma
nd(GrouperInstallerUtils.java:10078)
        at
edu.internet2.middleware.grouperInstaller.util.GrouperInstallerUtils.execComma
nd(GrouperInstallerUtils.java:10041)
        at
edu.internet2.middleware.grouperInstaller.util.GrouperInstallerUtils.execComma
nd(GrouperInstallerUtils.java:10017)
        at
edu.internet2.middleware.grouperInstaller.GrouperInstaller.runClientCommand(Gr
ouperInstaller.java:10489)
        at
edu.internet2.middleware.grouperInstaller.GrouperInstaller.mainInstallLogic(Gr
ouperInstaller.java:8330)
        at
edu.internet2.middleware.grouperInstaller.GrouperInstaller.access$400(GrouperI
nstaller.java:82)
        at
edu.internet2.middleware.grouperInstaller.GrouperInstaller$GrouperInstallerMai
nFunction$2.logic(GrouperInstaller.java:1307)
        at
edu.internet2.middleware.grouperInstaller.GrouperInstaller.mainLogic(GrouperIn
staller.java:1530)
        at
edu.internet2.middleware.grouperInstaller.GrouperInstaller.main(GrouperInstall
er.java:549)

        at
edu.internet2.middleware.grouperInstaller.util.GrouperInstallerUtils.execComma
ndHelper(GrouperInstallerUtils.java:10175)
        at
edu.internet2.middleware.grouperInstaller.util.GrouperInstallerUtils.access$10
0(GrouperInstallerUtils.java:128)
        at
edu.internet2.middleware.grouperInstaller.util.GrouperInstallerUtils$2.run(Gro
uperInstallerUtils.java:10073)
        at
edu.internet2.middleware.grouperInstaller.util.GrouperInstallerUtils$1.run(Gro
uperInstallerUtils.java:8291)
        at java.lang.Thread.run(Thread.java:745)               








And the installation process ends right there, if you open this url:
hostip:8080/grouper-ws/status?diagnosticType=sources

it shows this message:

Grouper status error!


Error in status:
edu.internet2.middleware.grouper.exception.GrouperException: unable to
retrieve GrouperSystem: Problem attributeAssignAction:
AttributeAssignAction[name=assign,id=bbc2d7581ac849ccb2cd026db037aeb9],
Problem in HibernateSession: HibernateSession (5e0c65e3): notNew, notReadonly,
READ_WRITE_NEW, activeTransaction, session (31e2d8c2),
Problem in HibernateSession: HibernateSession (18d1fdd3): new, notReadonly,
READ_WRITE_NEW, notActiveTransaction, session (31e2d8c2)
        at
edu.internet2.middleware.grouper.SubjectFinder.findRootSubject(SubjectFinder.j
ava:866)
        at
edu.internet2.middleware.grouper.GrouperSession.startRootSession(GrouperSessio
n.java:427)
        at
edu.internet2.middleware.grouper.GrouperSession.startRootSession(GrouperSessio
n.java:445)
        at
edu.internet2.middleware.grouper.j2ee.status.GrouperStatusServlet.doGet(Groupe
rStatusServlet.java:159)
        at javax.servlet.http.HttpServlet.service(HttpServlet.java:617)
        at javax.servlet.http.HttpServlet.service(HttpServlet.java:717)
        at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFi
lterChain.java:290)
        at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChai
n.java:206)
        at
org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java
:233)
        at
org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java
:191)
        at
org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.j
ava:470)
        at
org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127)
        at
org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102)
        at
org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:1
09)
        at
org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:293)
        at
org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:859)
        at
org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process(Http11
Protocol.java:602)
        at
org.apache.tomcat.util.net.JIoEndpoint$Worker.run(JIoEndpoint.java:489)
        at java.lang.Thread.run(Thread.java:745)
Caused by: edu.internet2.middleware.grouper.internal.dao.GrouperDAOException:
Problem attributeAssignAction:
AttributeAssignAction[name=assign,id=bbc2d7581ac849ccb2cd026db037aeb9],
Problem in HibernateSession: HibernateSession (5e0c65e3): notNew, notReadonly,
READ_WRITE_NEW, activeTransaction, session (31e2d8c2),
Problem in HibernateSession: HibernateSession (18d1fdd3): new, notReadonly,
READ_WRITE_NEW, notActiveTransaction, session (31e2d8c2)
        at
edu.internet2.middleware.grouper.attr.assign.AttributeAssignAction.delete(Attr
ibuteAssignAction.java:343)
        at
edu.internet2.middleware.grouper.attr.assign.AttributeDefActionDelegate.config
ureActionList(AttributeDefActionDelegate.java:191)
        at
edu.internet2.middleware.grouper.attr.assign.AttributeDefActionDelegate.config
ureActionList(AttributeDefActionDelegate.java:59)
        at
edu.internet2.middleware.grouper.misc.GrouperCheckConfig.checkAttributes(Group
erCheckConfig.java:1848)
        at
edu.internet2.middleware.grouper.misc.GrouperCheckConfig.checkConfig(GrouperCh
eckConfig.java:463)
        at
edu.internet2.middleware.grouper.misc.GrouperStartup.startup(GrouperStartup.ja
va:256)
        at
edu.internet2.middleware.grouper.subj.SubjectResolverFactory.getInstance(Subje
ctResolverFactory.java:58)
        at
edu.internet2.middleware.grouper.SubjectFinder.getResolver(SubjectFinder.java:
878)
        at
edu.internet2.middleware.grouper.SubjectFinder.findRootSubject(SubjectFinder.j
ava:863)
        ... 18 more
Caused by: edu.internet2.middleware.grouper.internal.dao.GrouperDAOException:
Problem in HibernateSession: HibernateSession (5e0c65e3): notNew, notReadonly,
READ_WRITE_NEW, activeTransaction, session (31e2d8c2),
Problem in HibernateSession: HibernateSession (18d1fdd3): new, notReadonly,
READ_WRITE_NEW, notActiveTransaction, session (31e2d8c2)
        at
edu.internet2.middleware.grouper.hibernate.HibernateSession._internal_hibernat
eSessionCatch(HibernateSession.java:604)
        at
edu.internet2.middleware.grouper.hibernate.HibernateSession.callbackHibernateS
ession(HibernateSession.java:710)
        at
edu.internet2.middleware.grouper.internal.dao.hib3.Hib3AttributeAssignActionSe
tDAO.delete(Hib3AttributeAssignActionSetDAO.java:127)
        at
edu.internet2.middleware.grouper.attr.assign.AttributeAssignActionSet.delete(A
ttributeAssignActionSet.java:510)
        at
edu.internet2.middleware.grouper.attr.assign.AttributeAssignAction$1.callback(
AttributeAssignAction.java:322)
        at
edu.internet2.middleware.grouper.hibernate.HibernateSession.callbackHibernateS
ession(HibernateSession.java:700)
        at
edu.internet2.middleware.grouper.attr.assign.AttributeAssignAction.delete(Attr
ibuteAssignAction.java:272)
        ... 26 more
Caused by: java.lang.NoSuchMethodError:
edu.internet2.middleware.grouper.hibernate.ByHql.executeUpdate()V
        at
edu.internet2.middleware.grouper.internal.dao.hib3.Hib3AttributeAssignActionSe
tDAO$1.callback(Hib3AttributeAssignActionSetDAO.java:138)
        at
edu.internet2.middleware.grouper.hibernate.HibernateSession.callbackHibernateS
ession(HibernateSession.java:700)
        ... 31 more






and the tomcat log file has this


Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=256M;
support was removed in 8.0
Jan 12, 2017 12:40:36 AM org.apache.catalina.core.AprLifecycleListener init
INFO: The APR based Apache Tomcat Native library which allows optimal
performance in production environments was not found on the java.library.path:
/usr/java/packages/lib/amd64:/usr/lib64:/lib64:/
lib:/usr/lib
Jan 12, 2017 12:40:37 AM org.apache.coyote.http11.Http11Protocol init
INFO: Initializing Coyote HTTP/1.1 on http-8080
Jan 12, 2017 12:40:37 AM org.apache.catalina.startup.Catalina load
INFO: Initialization processed in 450 ms
Jan 12, 2017 12:40:37 AM org.apache.catalina.core.StandardService start
INFO: Starting service Catalina
Jan 12, 2017 12:40:37 AM org.apache.catalina.core.StandardEngine start
INFO: Starting Servlet Engine: Apache Tomcat/6.0.35
Grouper starting up: version: 2.3.0, build date: 2016/04/16 05:37:21, env: <no
label configured>
grouper.properties read from:
/programas/grouper/grouper.ui-2.3.0/dist/grouper/WEB-INF/classes/grouper.prope
rties
Grouper current directory is: /programas/grouper/apache-tomcat-6.0.35/bin
log4j.properties read from: 
/programas/grouper/grouper.ui-2.3.0/dist/grouper/WEB-INF/classes/log4j.propert
ies
Grouper is logging to file: 
/programas/grouper/apache-tomcat-6.0.35/logs/grouperUi/grouper_error.log, at
min level WARN for package: edu.internet2.middleware.grouper, based on
log4j.properties
grouper.hibernate.properties:
/programas/grouper/grouper.ui-2.3.0/dist/grouper/WEB-INF/classes/grouper.hiber
nate.properties
grouper.hibernate.properties: sa@jdbc:hsqldb:hsql://localhost:9001/grouper
subject.properties read from:
/programas/grouper/grouper.ui-2.3.0/dist/grouper/WEB-INF/classes/subject.prope
rties
sources.xml read from:      
/programas/grouper/grouper.ui-2.3.0/dist/grouper/WEB-INF/classes/sources.xml
sources configured in:        sources.xml
sources.xml        groupersource id: g:gsa
sources.xml        groupersource id: grouperEntities
sources.xml        jdbc source id:   jdbc: GrouperJdbcConnectionProvider
Grouper error: grouper versions do not match, GrouperVersion.class: 2.3.0,
grouper.version.properties: 2.3.0, manifest: null
Couldnt startup grouper: Problem attributeAssignAction:
AttributeAssignAction[name=assign,id=bbc2d7581ac849ccb2cd026db037aeb9],
Problem in HibernateSession: HibernateSession (6bcae9): notNew, notRe
adonly, READ_WRITE_NEW, activeTransaction, session (5aa781f2),
Problem in HibernateSession: HibernateSession (2744dcae): new, notReadonly,
READ_WRITE_NEW, notActiveTransaction, session (5aa781f2)
edu.internet2.middleware.grouper.internal.dao.GrouperDAOException: Problem
attributeAssignAction:
AttributeAssignAction[name=assign,id=bbc2d7581ac849ccb2cd026db037aeb9],
Problem in HibernateSession
: HibernateSession (6bcae9): notNew, notReadonly, READ_WRITE_NEW,
activeTransaction, session (5aa781f2),
Problem in HibernateSession: HibernateSession (2744dcae): new, notReadonly,
READ_WRITE_NEW, notActiveTransaction, session (5aa781f2)
        at
edu.internet2.middleware.grouper.attr.assign.AttributeAssignAction.delete(Attr
ibuteAssignAction.java:343)
        at
edu.internet2.middleware.grouper.attr.assign.AttributeDefActionDelegate.config
ureActionList(AttributeDefActionDelegate.java:191)
        at
edu.internet2.middleware.grouper.attr.assign.AttributeDefActionDelegate.config
ureActionList(AttributeDefActionDelegate.java:59)
        at
edu.internet2.middleware.grouper.misc.GrouperCheckConfig.checkAttributes(Group
erCheckConfig.java:1848)
        at
edu.internet2.middleware.grouper.misc.GrouperCheckConfig.checkConfig(GrouperCh
eckConfig.java:463)
        at
edu.internet2.middleware.grouper.misc.GrouperStartup.startup(GrouperStartup.ja
va:256)
        at
edu.internet2.middleware.grouper.ui.GrouperUiFilter.init(GrouperUiFilter.java:
800)
        at
org.apache.catalina.core.ApplicationFilterConfig.getFilter(ApplicationFilterCo
nfig.java:295)
        at
org.apache.catalina.core.ApplicationFilterConfig.setFilterDef(ApplicationFilte
rConfig.java:422)
        at
org.apache.catalina.core.ApplicationFilterConfig.<init>(ApplicationFilterConfi
g.java:115)
        at
org.apache.catalina.core.StandardContext.filterStart(StandardContext.java:4072
)
        at
org.apache.catalina.core.StandardContext.start(StandardContext.java:4726)
        at
org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1057)
        at org.apache.catalina.core.StandardHost.start(StandardHost.java:840)
        at
org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1057)
        at
org.apache.catalina.core.StandardEngine.start(StandardEngine.java:463)
        at
org.apache.catalina.core.StandardService.start(StandardService.java:525)
        at
org.apache.catalina.core.StandardServer.start(StandardServer.java:754)
        at org.apache.catalina.startup.Catalina.start(Catalina.java:595)
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
        at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.j
ava:43)
        at java.lang.reflect.Method.invoke(Method.java:498)
        at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:289)
        at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:414)
Caused by: edu.internet2.middleware.grouper.internal.dao.GrouperDAOException:
Problem in HibernateSession: HibernateSession (6bcae9): notNew, notReadonly,
READ_WRITE_NEW, activeTransaction, session (5aa781f2),
Problem in HibernateSession: HibernateSession (2744dcae): new, notReadonly,
READ_WRITE_NEW, notActiveTransaction, session (5aa781f2)
        at
edu.internet2.middleware.grouper.hibernate.HibernateSession._internal_hibernat
eSessionCatch(HibernateSession.java:604)
        at
edu.internet2.middleware.grouper.hibernate.HibernateSession.callbackHibernateS
ession(HibernateSession.java:710)
        at
edu.internet2.middleware.grouper.internal.dao.hib3.Hib3AttributeAssignActionSe
tDAO.delete(Hib3AttributeAssignActionSetDAO.java:127)
        at
edu.internet2.middleware.grouper.attr.assign.AttributeAssignActionSet.delete(A
ttributeAssignActionSet.java:510)
        at
edu.internet2.middleware.grouper.attr.assign.AttributeAssignAction$1.callback(
AttributeAssignAction.java:322)
        at
edu.internet2.middleware.grouper.hibernate.HibernateSession.callbackHibernateS
ession(HibernateSession.java:700)
        at
edu.internet2.middleware.grouper.attr.assign.AttributeAssignAction.delete(Attr
ibuteAssignAction.java:272)
        ... 24 more
Caused by: java.lang.NoSuchMethodError:
edu.internet2.middleware.grouper.hibernate.ByHql.executeUpdate()V
        at
edu.internet2.middleware.grouper.internal.dao.hib3.Hib3AttributeAssignActionSe
tDAO$1.callback(Hib3AttributeAssignActionSetDAO.java:138)
        at
edu.internet2.middleware.grouper.hibernate.HibernateSession.callbackHibernateS
ession(HibernateSession.java:700)
        ... 29 more
Jan 12, 2017 12:40:43 AM org.apache.catalina.core.StandardContext start
SEVERE: Error filterStart
Jan 12, 2017 12:40:43 AM org.apache.catalina.core.StandardContext start
SEVERE: Context [/grouper] startup failed due to previous errors
Jan 12, 2017 12:40:43 AM org.apache.catalina.loader.WebappClassLoader
clearReferencesThreads
SEVERE: The web application [/grouper] appears to have started a thread named
[C3P0PooledConnectionPoolManager[identityToken->1bqq1he9l13zkg16v1jzel|7bd7d6d
6]-AdminTaskTimer] but has failed to stop it. This is very likely to create a
memory leak.
Jan 12, 2017 12:40:43 AM org.apache.catalina.loader.WebappClassLoader
clearReferencesThreads
SEVERE: The web application [/grouper] appears to have started a thread named
[C3P0PooledConnectionPoolManager[identityToken->1bqq1he9l13zkg16v1jzel|7bd7d6d
6]-HelperThread-#0] but has failed to stop it. This is very likely to create a
memory leak.
Jan 12, 2017 12:40:43 AM org.apache.catalina.loader.WebappClassLoader
clearReferencesThreads
SEVERE: The web application [/grouper] appears to have started a thread named
[C3P0PooledConnectionPoolManager[identityToken->1bqq1he9l13zkg16v1jzel|7bd7d6d
6]-HelperThread-#1] but has failed to stop it. This is very likely to create a
memory leak.
Jan 12, 2017 12:40:43 AM org.apache.catalina.loader.WebappClassLoader
clearReferencesThreads
SEVERE: The web application [/grouper] appears to have started a thread named
[C3P0PooledConnectionPoolManager[identityToken->1bqq1he9l13zkg16v1jzel|7bd7d6d
6]-HelperThread-#2] but has failed to stop it. This is very likely to create a
memory leak.
Jan 12, 2017 12:40:45 AM org.apache.catalina.startup.HostConfig
deployDescriptor
INFO: Deploying configuration descriptor manager.xml
Jan 12, 2017 12:40:45 AM org.apache.catalina.startup.HostConfig
deployDescriptor
INFO: Deploying configuration descriptor host-manager.xml
Jan 12, 2017 12:40:45 AM org.apache.catalina.startup.HostConfig
deployDirectory
INFO: Deploying web application directory ROOT
Jan 12, 2017 12:40:45 AM org.apache.catalina.startup.HostConfig
deployDirectory
INFO: Deploying web application directory docs
Jan 12, 2017 12:40:45 AM org.apache.catalina.startup.HostConfig
deployDirectory
INFO: Deploying web application directory examples
Jan 12, 2017 12:40:45 AM org.apache.coyote.http11.Http11Protocol start
INFO: Starting Coyote HTTP/1.1 on http-8080
Jan 12, 2017 12:40:45 AM org.apache.jk.common.ChannelSocket init
INFO: JK: ajp13 listening on /0.0.0.0:8009
Jan 12, 2017 12:40:45 AM org.apache.jk.server.JkMain start
INFO: Jk running ID=0 time=0/63  config=null
Jan 12, 2017 12:40:45 AM org.apache.catalina.startup.Catalina start
INFO: Server startup in 8821 ms
Exception in thread
"C3P0PooledConnectionPoolManager[identityToken->1bqq1he9l13zkg16v1jzel|7bd7d6d
6]-AdminTaskTimer" java.lang.NullPointerException
        at
com.mchange.v2.log.slf4j.Slf4jMLog$Slf4jMLogger.levelLogger(Slf4jMLog.java:164
)
        at
com.mchange.v2.log.slf4j.Slf4jMLog$Slf4jMLogger.isLoggable(Slf4jMLog.java:332)
        at
com.mchange.v2.async.ThreadPoolAsynchronousRunner$DeadlockDetector.run(ThreadP
oolAsynchronousRunner.java:777)
        at java.util.TimerThread.mainLoop(Timer.java:555)
        at java.util.TimerThread.run(Timer.java:505)



Please help

Best regards

Andres